Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00869 ATGGGCATTCAACATATGCTGGAAAATGCTGGATTACTCGGGTTGGGTCGGATGGGGGGCACTTATTGCGAGAGAGTCATTAAGATGTTTTACGCAAATTTCCAACTTTCTGAGGAGCTAGTTGAGGTGCAAACCTATATTTTTGGACGGGAGTTGAGATTCACTCCCGACCATATCAATACAATACTTGAATGTTATGGGGCAAGCGAGGAATATTATGGCATAGCTAAGACGAAGCCACCATTTATCAAGGAAGGAGATGGGCTAGCCGTTCTTAGATTGTTGCACAAGGATCCTGAGATTGCCCATTACAAGAGGCCAAAGGCTAATGAGTTGAATGTAATGGCCCGAGTAATCCACATGATATTGACGTACACAATTTTGCCTAGGATTGGGCATCGAGACCATGTTACAAGCATGGATCTGTATATTTTGGAGAAGGTGTTCAGGGAAAAAAAAGTGAACATTAGATATATCATAGCGAAGCACATGGAAGAGGTCATCAACAGCCCATCAATGAGCCTACCGTACAATTGGCTTATCCAGACTATAGTTGAGCAGTTTGGGGTTCCCATTTCTGCGAATGAGCCAAGAATTGAAGCGACGACCACTGACACCTACAAAAGAGCCAACTTGGATCGATTGGGCATCACCCAAGTTGATGGCGGATGGTTCCGCAAGTCCAAACAGAAGGCAGCACCTCCACCCGTTACAGAGCCTCAGTATGCAGGCACCTCTTATGATATGCCGCCTCCTCCCCACTTAGAGCCTGAGTATGCGTATGCAGCCCCCGAATATGAAATGCCACCTCCTCCACAATCATCACACTTTACTGCGATGCCTGAGGAGTCATTTGCCTGGATGAGCAGAATGGAGGAGCTCCATCATGCGTCGATGACCAGAATGCAAATGATGGAAGAGCACGTGCAAAGGCAACAAATCGAGCTACAAAGAGCTAACGAGATCGCAACAGAGAGGTGGGCCATTGCCCAACAGTGGCAGGTGGAAGCATCAGAGAGCAGACACGCCGCAGAGCAGTGGCGTATGCAAGAGGCGGAGCTCGCTGAAGCGAGGCATAAAGAAGTTGAAAAGTGGCATCTTCAAGAGGCGGACCTCGCAGCAGAGAGGTATCGCCAATCCGAACAATGGCATGTTCGAGAAGAGGAGCGACATGTTCTAGAAGAGCAGCGACACCGTGAGGTGTTGGCCGCACTCAAGAGACGTGGGAGGCGATTAGCCCGATCATCATCCTCGTCATCGCCCAATGACGCACCTGATGCCACATTCCACCTTGACCCTATCAGTCGCCGCCAAGGATCACCTGGAGCTGGGGCGCTCCAACCTCTGCCCAGAAGAGTTGTGCGCGTGCCTGTGTCGGTCATGTCCTCGTTCAAGATATATGTCCAGACAAATACCCGTTATAACAAGGAGACGTGCGCAATTCTTGGGGGAAAGTTGGAGGGCGAACATTACGTTGTCTCACATCTCATCTTTCCGGAACAAGAAGGGACGCCAAATACGTGTATTGCGAGCAATGAAGAAGCCATATTGGCGTTTCATCAGTCAAAGAATCTATTGCAATTAGGGTGGATTCACACACACCCAAAGCAAGGGTTGTTTATGTCCTCCGTTGACTTGCACACCCAATATGGGTACCAGCGATTGTTGTGGGAGTCCATCTCTATCATTGTAACTCCATCAGACAAAAAGACGCCTGCAATAGTTAATCGGCCTCCACTAGACGAAATGGAGGGAAAGTCAGAAACAAGAGCTCCTAGCTCACCGAAGGTAGAACTGGTTCAAGAACCGGAGCTCAAAAAGATTAAAATGTCTTCGACGACCGAGGACGACAACGACAACGACAACGCTAACACCGGTGAGACCAAAAAACAAAGATACAAGCGACGGAAAATTGCAATTTTCTTTGCGTACTGTGGCGTTGGTTATCAAGGCATGCAGAAAAATCCTGGAGCTAAAACAATCGAATCAGATCTAGAAGAAGCACTTTACCTCGCTGGAGCTGTTCCGGAGCAAGATCGCGGGAACTCTAAGCGCTATGATTGGGCTCGATCTGCGCGTACGGATAAGGGAGTAAGTGCCGTTGGTCAAGTCGTCTCTGGAAGGTTCTACATTGACCCCCCGGGTTTCGTCGATCGCCTAAACTCAAACCTTTCGCCTCAGATTCGAATTTTTGGCTACAAGCGTGTGACAGCTTCGTTTAATGCTAAGAAGTTTTGTGATCGGAGAAAGTATGTGTATCTCCTTCCTGTTTTTGCTCTTGATCCAAATGCGCATCGAGATCGAGAGAGTGTTTTGGCTAGTTTGGGTTCTGAAAATGAACTGGTTAAATGTTTAGAATGCTCTGAGAGAGGACGAAAGGTTGAAGGCTTGATGGGAAAGCGTAATTTGGAATCAAAAGCTTCAGATACTGTTTCAGACATTTCTTCGACCGTTGATAATACTATACTAACCTCTGAGTTTGAGGAGGAAAGAAAAGAGTTATCAGAAAATGCCAGTGCGATTGACTTAAATTGGGAGGCCTCAAAAGCAGCAGAATGTGTTGGTGAAATTAGGAATACCGAAACCAGCGAGAGTGAAGAAATTGACATGGTGAAAAAAGAAAGTAATGATGGGGTTGCGAAGCCTGAAAAAAGGTTTTGTTATGGCGAAGAAGAGAGAGATAGGTTCAACAAGATATTGAATTTTTATGTTGGGACTCATAACTTCCACAACTTCACCACCAGAACGAAAGCAGAGGACCCTGCTGCTCAGCGTTTCATTGTTTCATTTGATGCAAAAACCACCGTCTTTGTTGATGGAATCGAGTTTGTGAAGTGCGTGGTGGTTGGACAGAGCTTCATGCTTCATCAAATACGGAAGATGATGGGACTTGCGGTGGCGATAATGAGAAATTGCACTTCAGAGTCCTTGATTGAGAAGGCTCTGCAAAAAGATATTAACATTAATGTGCCAACTGCACCCGAGGTTGGCTTGTTCTTGGAAGAGTGTCTATTTTCATCGTATAATAAGAAGTGGAAAGACACTCACGAAGAGGTATCGATGAAAGCATACGAAGAAGAGGCTGAAGAATTCACAATGAAGCAGATATACTCCCATATTGCGTCTTCCGAGCACAAAGACGGAGTTGTGGGTCTTTGGTTGCATTCTCTAAACCACCGTAACTATCCTGATTTACTACTCAAAGACAGCAGCAAAGAAGAAGATGACTGGCTGAAGAAAATGGACGAGTGA 3252 46.37 MGIQHMLENAGLLGLGRMGGTYCERVIKMFYANFQLSEELVEVQTYIFGRELRFTPDHINTILECYGASEEYYGIAKTKPPFIKEGDGLAVLRLLHKDPEIAHYKRPKANELNVMARVIHMILTYTILPRIGHRDHVTSMDLYILEKVFREKKVNIRYIIAKHMEEVINSPSMSLPYNWLIQTIVEQFGVPISANEPRIEATTTDTYKRANLDRLGITQVDGGWFRKSKQKAAPPPVTEPQYAGTSYDMPPPPHLEPEYAYAAPEYEMPPPPQSSHFTAMPEESFAWMSRMEELHHASMTRMQMMEEHVQRQQIELQRANEIATERWAIAQQWQVEASESRHAAEQWRMQEAELAEARHKEVEKWHLQEADLAAERYRQSEQWHVREEERHVLEEQRHREVLAALKRRGRRLARSSSSSSPNDAPDATFHLDPISRRQGSPGAGALQPLPRRVVRVPVSVMSSFKIYVQTNTRYNKETCAILGGKLEGEHYVVSHLIFPEQEGTPNTCIASNEEAILAFHQSKNLLQLGWIHTHPKQGLFMSSVDLHTQYGYQRLLWESISIIVTPSDKKTPAIVNRPPLDEMEGKSETRAPSSPKVELVQEPELKKIKMSSTTEDDNDNDNANTGETKKQRYKRRKIAIFFAYCGVGYQGMQKNPGAKTIESDLEEALYLAGAVPEQDRGNSKRYDWARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLSPQIRIFGYKRVTASFNAKKFCDRRKYVYLLPVFALDPNAHRDRESVLASLGSENELVKCLECSERGRKVEGLMGKRNLESKASDTVSDISSTVDNTILTSEFEEERKELSENASAIDLNWEASKAAECVGEIRNTETSESEEIDMVKKESNDGVAKPEKRFCYGEEERDRFNKILNFYVGTHNFHNFTTRTKAEDPAAQRFIVSFDAKTTVFVDGIEFVKCVVVGQSFMLHQIRKMMGLAVAIMRNCTSESLIEKALQKDININVPTAPEVGLFLEECLFSSYNKKWKDTHEEVSMKAYEEEAEEFTMKQIYSHIASSEHKDGVVGLWLHSLNHRNYPDLLLKDSSKEEDDWLKKMDE 1083
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26903043 26907840 + BLOR04888 Blo12g00869 68130

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00869 1083 MobiDBLite consensus disorder prediction 600 629 - -
Blo12g00869 1083 ProSiteProfiles MPN domain profile. 453 589 IPR037518 -
Blo12g00869 1083 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 457 555 IPR000555 GO:0005515|GO:0008233|GO:0008237
Blo12g00869 1083 SMART pad1_6 452 580 IPR000555 GO:0005515|GO:0008233|GO:0008237
Blo12g00869 1083 Pfam tRNA pseudouridine synthase 903 1005 IPR020097 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Blo12g00869 1083 Gene3D - 825 1067 IPR020095 GO:0003723|GO:0009982
Blo12g00869 1083 PANTHER TRNA PSEUDOURIDINE SYNTHASE 613 1067 - -
Blo12g00869 1083 SUPERFAMILY JAB1/MPN domain 466 566 - -
Blo12g00869 1083 MobiDBLite consensus disorder prediction 410 448 - -
Blo12g00869 1083 Gene3D - 626 746 IPR020094 GO:0003723|GO:0009982
Blo12g00869 1083 SUPERFAMILY Pseudouridine synthase 634 1015 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Blo12g00869 1083 Gene3D Cytidine Deaminase, domain 2 445 618 - -
Blo12g00869 1083 Coils Coil 302 322 - -
Blo12g00869 1083 MobiDBLite consensus disorder prediction 571 630 - -
Blo12g00869 1083 TIGRFAM hisT_truA: tRNA pseudouridine(38-40) synthase 636 999 IPR001406 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Blo12g00869 1083 CDD PseudoU_synth_PUS1_PUS2 640 1005 IPR041708 GO:0009982|GO:0031119
Blo12g00869 1083 PANTHER PSEUDOURIDYLATE SYNTHASE 613 1067 IPR001406 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Blo12g00869 1083 MobiDBLite consensus disorder prediction 227 257 - -
Blo12g00869 1083 Pfam Putative plant transposon protein 20 191 IPR046796 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00869 K06173 truA, PUS1; tRNA pseudouridine38-40 synthase [EC:5.4.99.12] - csv:101219581 703.745
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00440 Blo-Chr4:3642280 Blo12g00869 Blo-Chr12:26903043 5.92E-26 dispersed
Blo08g00441 Blo-Chr8:8998892 Blo12g00869 Blo-Chr12:26903043 2.98E-09 dispersed
Blo12g00869 Blo-Chr12:26903043 Blo16g00698 Blo-Chr16:26886581 0 dispersed
Blo12g00869 Blo-Chr12:26903043 Blo10g00908 Blo-Chr10:28048659 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g144 . Blo12g00869 . Bda03g00305 . Bpe04g00267 Bma04g00269 . . . . Cma09g00077 . . . Cpe06g00041 . . . . . . . . . . . . . . . . Cone7ag1918 . . Lsi04g01786 Csa04g02676 . . . . . . . . . . Sed01g2458 . Cmo09g00076 . . . Car09g00067 . . Bhi09g02939 Tan01g5065 Cmetu07g1422 . Hepe01g2313 Mch11g0079 . Cla05g01587 Cam05g1696 Cec05g1697 Cco05g1748 Clacu05g1683 Cmu05g1573 Cre05g1690 . . . Cme07g00081
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008390 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00869 Blo_Chr12 FPKM 4.007828 6.850306 9.586659 8.703974 9.068554 6.864169 6.973318 17.216715 16.62874 17.744957