Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00873 ATGGCTTTGATCAGAAGCAAGCCAAGTTTCCCGCACTTTCTCTCTTCTCTCTCGCGGCAAGTGTGTCATCGCTCAGCTCTTTTTTCATCCTCGTCATCTTCTTCTCTCGAAATCCAAAATCATTTCGAAGATGAAGGCGGAAATGAAAATGCTAACGATGCCCCTGAGACTGAGCTTTCTTCAGAGGAAACCCTAATCGCCGACAAATTGCACGCCGTAATCAAGGACCACCAGCGTAGAAACCCGACCGCCAATCCTAATATGCCTCCTTCTTCACCTGACCTAACTATTTCCGCTCTTTCACATGATTTCTCTCAAATATCGGCCGTTCATTCCATATCTGCATCAATCGCCCGCCGCGTGATTGAGAAATGCGGCGGGGTCCGCCATGGTATCCCTTTCCTTCAAGTCCTAGCGTTCTTCAATTGGGTCACTACTCGCGAGGGGTTCGAGAACAAAGTACAGACCTACAATGAGATGGTCGACCTAGCGGGAAAGGTAAGGCAATTTGATTTAGCTTGGCATCTGATTGACTTAATGAAAGCTAGAAACGTCGAAATTACAGTAGAAACGTTCTCAATTCTTGTTCGTCGGTATGTAAGAGCGGGATTAGCGGCAGAAGCTGTCCATACCTTTAATCGTATGGACGATTATGGTTGCAAACCCGATAAAATCGCTTTCTGCATATTAATCAGTATCCTTTGTAAGAAGAGAAGGGCAAGCGAAGCTCAATCATTTTTTGATAGTTTAAAGGATAGGTTTGAGCTTGATGTGGTTGTGTACTCTAGCTTGGTTCATGGATGGTGTCGAGCTGGTAATATTTCAGAGGCGGAGAGGGTGTTTGGGGAGATGAAGATGGCTGGCATAAAACCGAATGTGTATACTTACAGTATAGTGATTGATGGATTGTGTAGATGTGGCCAAATTACACGATCCCATGATGTTTTAGCAGAGATGATTGATGAAAATTGTAACCCTAATGCTGTAATATTTAACAATCTAATGAGGGTTCACGTGAAGGCGGGCAGAACTGAAAAGGTATTGCAAGTGTATAATCAGATGAAGAAGGTAGGTTGCCCTGCCGACACAATTACTTATAATTTCCTTATTGATAGTCATTGCAAGGATGGCAACCTTGAAGCTGCTATGAAAGTCTTTTATTCGATGATTAAGAAAGACTGCACCCCAAATGCTTCGACTGTCAATCCTATATTCAGAAGCATTGCAAAACTGCGAGATGTAAATGGTGCTCACAGGTTAATTGGTAAAATGAAAGAATCAAAATGTAAACCCAATACAGTAACTTACAATATATTGATGCAGATGTTTGCTGAATCGAAATCAGCTGATATGGTTATTAAGTTGAAGAAGGAATTGGATGAGAATGAAGTCGAGCCTAATGTGAATACTTATAAGATTTTGATTTCGATGTATTGTGGGATGGGGCATTGGAACAATGCCTATAATTTCTTTAGGGAGATGATTGAGGAGAAATGCTTAAAACCTGGCCAACCTGTCTATGAGATGGTTCTCCAACAATTAAGGAAAGCAGGGCAGTTGAAAAAGCACGAGGAGTTAGTGGAGAAGATGATTGAGAGAGGATTTGCTACTCGGCCACTGTAG 1623 42.14 MALIRSKPSFPHFLSSLSRQVCHRSALFSSSSSSSLEIQNHFEDEGGNENANDAPETELSSEETLIADKLHAVIKDHQRRNPTANPNMPPSSPDLTISALSHDFSQISAVHSISASIARRVIEKCGGVRHGIPFLQVLAFFNWVTTREGFENKVQTYNEMVDLAGKVRQFDLAWHLIDLMKARNVEITVETFSILVRRYVRAGLAAEAVHTFNRMDDYGCKPDKIAFCILISILCKKRRASEAQSFFDSLKDRFELDVVVYSSLVHGWCRAGNISEAERVFGEMKMAGIKPNVYTYSIVIDGLCRCGQITRSHDVLAEMIDENCNPNAVIFNNLMRVHVKAGRTEKVLQVYNQMKKVGCPADTITYNFLIDSHCKDGNLEAAMKVFYSMIKKDCTPNASTVNPIFRSIAKLRDVNGAHRLIGKMKESKCKPNTVTYNILMQMFAESKSADMVIKLKKELDENEVEPNVNTYKILISMYCGMGHWNNAYNFFREMIEEKCLKPGQPVYEMVLQQLRKAGQLKKHEELVEKMIERGFATRPL 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26944042 26945664 - BLOR04892 Blo12g00873 68134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00873 540 PANTHER CHLOROPLAST RNA PROCESSING 1-LIKE PROTEIN 16 539 - -
Blo12g00873 540 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Blo12g00873 540 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Blo12g00873 540 Pfam PPR repeat family 154 199 IPR002885 -
Blo12g00873 540 Pfam PPR repeat family 257 305 IPR002885 -
Blo12g00873 540 Pfam PPR repeat 219 249 IPR002885 -
Blo12g00873 540 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Blo12g00873 540 Gene3D Tetratricopeptide repeat domain 108 245 IPR011990 GO:0005515
Blo12g00873 540 Gene3D Tetratricopeptide repeat domain 323 409 IPR011990 GO:0005515
Blo12g00873 540 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Blo12g00873 540 Gene3D Tetratricopeptide repeat domain 249 322 IPR011990 GO:0005515
Blo12g00873 540 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Blo12g00873 540 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 153 187 IPR002885 -
Blo12g00873 540 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Blo12g00873 540 Gene3D Tetratricopeptide repeat domain 410 539 IPR011990 GO:0005515
Blo12g00873 540 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Blo12g00873 540 TIGRFAM PPR: pentatricopeptide repeat domain 434 468 IPR002885 -
Blo12g00873 540 TIGRFAM PPR: pentatricopeptide repeat domain 294 328 IPR002885 -
Blo12g00873 540 TIGRFAM PPR: pentatricopeptide repeat domain 191 223 IPR002885 -
Blo12g00873 540 TIGRFAM PPR: pentatricopeptide repeat domain 470 499 IPR002885 -
Blo12g00873 540 TIGRFAM PPR: pentatricopeptide repeat domain 259 293 IPR002885 -
Blo12g00873 540 TIGRFAM PPR: pentatricopeptide repeat domain 329 362 IPR002885 -
Blo12g00873 540 TIGRFAM PPR: pentatricopeptide repeat domain 400 433 IPR002885 -
Blo12g00873 540 TIGRFAM PPR: pentatricopeptide repeat domain 364 398 IPR002885 -
Blo12g00873 540 TIGRFAM PPR: pentatricopeptide repeat domain 156 188 IPR002885 -
Blo12g00873 540 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 16 539 - -
Blo12g00873 540 SUPERFAMILY TPR-like 221 497 IPR011990 GO:0005515
Blo12g00873 540 Pfam Pentacotripeptide-repeat region of PRORP 348 496 IPR033443 -
Blo12g00873 540 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00873 - - - zju:107422771 810.831
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00873 Blo-Chr12:26944042 Blo17g00090 Blo-Chr17:691278 8.32E-40 dispersed
Blo12g00873 Blo-Chr12:26944042 Blo16g00207 Blo-Chr16:4651416 8.51E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g164 . Blo12g00873 . Bda03g00299 . Bpe04g00260 Bma04g00261 . . . . . Car01g01561 . . . . . . . . . . . . . . . . . . . Cone7ag1913 . . Lsi04g01777 . Chy04g00393 . . . . . . Bpe14g00404 . . . . . . . . . . . . . . . . . . Cla05g01599 Cam05g1710 Cec05g1710 Cco05g1767 Clacu05g1697 Cmu05g1586 Cre05g1705 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012790 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 0 1 1 1 28