Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00875 ATGAAGAATGGAAGTAGTTGCAATGGAAGTTCCTTCGATTTAAGATTTTCTTCTCTCATAGCCTCTGGCGAACATGATTTTCTCGTCTCTTCAACTGGTTCTCAGGTCACAGCTAGGGCTCTCGAAGGGAAGGTCGTTGGGCTGTACTTCTCGGCGAACTGGAATCCAGAGTGCAGAAACTTCACCGACACTCTCGTCAAGTTGTACCAGAAGCTCCAAAATAACCAGTCGTACTTCGAAATCGTCTTCGTATCTTCCGACGAAGATTCCGAGGCTTTCAAAGCTTACCACTCATGCATGCCATGGCCGGCGATCCCGTTCTCCGATTTGGAAATCAAAAAGGCGTTGAATCGACGGTTTGGTATTGAAGAAATTCCATGCTTGATTATAATTCAACCCTACCACAACAACGAAGAGGAAGAAGAAATTTTGAAAAATGGAGTTGATTTGGTTTATCGATATGGAGTTGAAGCTTTTCCCTTCACCAAACAGCGGCTAAAAGAATTGAAGGATGAAGAAAGAGAGAAACAAGAGAATCAGACCCTCGCCAATTTACTATCAAACTACCATAGAAACTTTCTTTTGGGTCACCCCCAGTTGGATCAGGTGTCTGTAGCTTCATTAATGGGGAAGACGATAGGTCTGTACTTTTCAGCGCAGTGGTGCTTACCTGGAGTTTTCACGCCTAAGCTCATCTCCATCTACAATAAGATAAACCATTCTTCTCGAATCAATCAAGAACACGACAAGCTCTTCCAGATAGTCTTCGTCTCCATCGACAAAACCGAAGCCTCTTTCGATTCCTACTTCAAAACCATGCCATGGCTCGCTCTGCCGTTTGGTGACGCTAATATAGCAAACCTGGTCAAGCATTTCGACGTGAGAGACATTCCTTGTCTGGTAATCATCGGCCCGGATGGGAAAACCGTAACCAAACAAGGGAGAATTCTGATTAATCTATATAAGGAGAATGCGTATCCATTTACAGAGGCGAGAGTGGAGGTTCTCGAGAGAGAAGAAGACGAAGAGGCCGATAAGCTCCCCAGATCGGTGATCCATTTTGGGGACAGACACGAACTGAGTTTGGTGGGTAGGGGACTTTTTATGTGCTGTGACTGTAACGAACAAGGGTCTGGTTGGGCTTATCAGTGTCTGCAATGTGGGTTCGAGGTCCATCCCAAGTGCGTCAAACACGAGTCAGATGGCTCCGCCATTGTTGACGCATGA 1227 45.56 MKNGSSCNGSSFDLRFSSLIASGEHDFLVSSTGSQVTARALEGKVVGLYFSANWNPECRNFTDTLVKLYQKLQNNQSYFEIVFVSSDEDSEAFKAYHSCMPWPAIPFSDLEIKKALNRRFGIEEIPCLIIIQPYHNNEEEEEILKNGVDLVYRYGVEAFPFTKQRLKELKDEEREKQENQTLANLLSNYHRNFLLGHPQLDQVSVASLMGKTIGLYFSAQWCLPGVFTPKLISIYNKINHSSRINQEHDKLFQIVFVSIDKTEASFDSYFKTMPWLALPFGDANIANLVKHFDVRDIPCLVIIGPDGKTVTKQGRILINLYKENAYPFTEARVEVLEREEDEEADKLPRSVIHFGDRHELSLVGRGLFMCCDCNEQGSGWAYQCLQCGFEVHPKCVKHESDGSAIVDA 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26955640 26957050 - BLOR04894 Blo12g00875 68136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00875 408 SUPERFAMILY Thioredoxin-like 28 133 IPR036249 -
Blo12g00875 408 Gene3D Glutaredoxin 21 163 - -
Blo12g00875 408 Gene3D Glutaredoxin 190 329 - -
Blo12g00875 408 SUPERFAMILY Cysteine-rich domain 345 397 IPR046349 -
Blo12g00875 408 ProSiteProfiles Thioredoxin domain profile. 18 175 IPR013766 -
Blo12g00875 408 SUPERFAMILY Thioredoxin-like 192 312 IPR036249 -
Blo12g00875 408 PANTHER THIOREDOXIN 15 395 - -
Blo12g00875 408 Pfam Thioredoxin-like 210 308 IPR012336 -
Blo12g00875 408 Pfam Thioredoxin-like 43 135 IPR012336 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00875 K17609 NXN; nucleoredoxin [EC:1.8.1.8] - csv:101212204 514.227
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00395 Blo-Chr1:4475468 Blo12g00875 Blo-Chr12:26955640 1.86E-68 dispersed
Blo12g00875 Blo-Chr12:26955640 Blo18g00316 Blo-Chr18:3287332 1.03E-07 dispersed
Blo12g00875 Blo-Chr12:26955640 Blo17g00048 Blo-Chr17:307230 1.97E-72 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g172 . Blo12g00875 . . . Bpe04g00258 Bma04g00259 . . . . Cma09g00088 . . . Cpe06g00051 . . . . . . . . . . . . . . . . . . . Lsi04g01774 . Chy04g00395 . . . . . . . . . . . Cmo09g00086 . . . Car09g00076 . . . . . . . . . Cla05g01601 Cam05g1712 Cec05g1712 Cco05g1769 Clacu05g1699 Cmu05g1588 Cre05g1707 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012145 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00875 Blo_Chr12 FPKM 4.714756 4.048717 4.163947 4.735971 5.274147 3.588398 4.841864 3.95363 3.53277 3.911554