Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00877 ATGGCAGCCACTGCCGATTCTTCCTCCAATCATCACTCCCCTCGAGGCTCTGGAGCTTCCGCCGACGACCTCCAGGGCCATGGATTGCGCAGGGGTAATCTACCTTCGCCCTGGGCCAAAGTCGTCCGGGGTGATTCGGAATTAATGCCAGCCGTCAATCACTCTCCTCCATCGCCGCCTTTACAGACCGCTCCGCCACTGGAGCAAACCCCTTCGCCCGATTCCTCTGTTTCGAGGATGGCTCCTTCGTCACCTCCACCCGATCAATCTGCGGCTACCGAGAGCTCCAATCTCGGCCTTGGAAATGGTAATGGAGGGGCTCGCTCTAAGAAGCCCGCTTGGAACAAGCCCTCAAATGGCGTTCTCAAGACTGCTCCTGTAATGGATGCTGTTTCTTGGCCTGCTTTATCGGAGTCTACTAAGGCTTCTCCTAAATTGTCCGCTGATTCTTCTTCAAAGCTTACTGCCAATGGATCCGTCTCTACTCCTCAGGAACTTCCAAGTAATCCAAAGTCTAATTCTGCACCAAACTCAAGTCCATCTCTACAAAGATCAACAAAGCGTGGCGGTGGTGGCAACTCTGCCAGTGGTCCTGCACGAAGTGGGTTTGCCCACCCTCCTCCACCTCCCCCGCCACCACCATTTCCTGTATTTGCTATACCTTTAAATAATTATGGCAATCAGGTACCAATAGTGCCTGATCCTTCTCTTAGGGATTCTTCCTATAGGAGCAATAATTGGGAGCCCAGAGCTGTTGGAGCATTTGTTCCTCAACCACAAACAGTTATTGATCACCGGAATTCTTCCCGTCGTGGAAACTTTGGGCCCCAATCTCGAGGAGATGGTCCTTATTATAATAATCCTGGAGGCAGGCGTGATTCAGAGCGTGGAAATTATTCTAATGGTCGAGATGCTCATTTGCAACAGCAGAGACCTCCTCCCAGAGGATTTGTGAGGCATCCCTCTCCCTACACTCCTGCGTTTTTGACCCCCCAACCCATACGACCTCCCCTTGGCAACCCCATTGCTTTTCCTGATTACGTCTATGGTCCTCCATTGCATGAACCTTTTAGAGGTGTGCCATTTATGCTGCCTCCGCCAATGATATTTCCTTTTCCAGATACTCCATTGCCTTCCTTGATACTGGTTCAAATAGAATATTACTTCAGTGATGCTAATTTGGTAAAAGATGATTATTTAAAGTTAAATATGGATGATCAGGGCTGGGTTCCTGTTTCCTTGATAGCAGGATTTCCCCGAGTAAAGAATTTAACAAACAACATCCAACTTATACTAGAGTCCTTGAGGGGTTCAACTATTGTTGAAGTACAGAATGATAAGTTAAGGAGGAGGAATGAGTGGATGAATTGGATACCATCTTCAAACCAGCCAGGAATAGATTCAGCCACTGGTGAATCAAGTAACAGTATTAACAGACTATCAACTTCTGTTCAAAAAATCACAGTGGGGGAAGGAGATAACCAAAGTAGACACAACGACCCTGATGCTGAGGCTGTTATAGACAGAACTACTGAGCTAGCTGGCCACGCACAACTTCCAAACGGAGATGTCAATCCTAGTGGCAGTTCACCAATCCATTCGAGTTTATCTGAGTAA 1617 47.87 MAATADSSSNHHSPRGSGASADDLQGHGLRRGNLPSPWAKVVRGDSELMPAVNHSPPSPPLQTAPPLEQTPSPDSSVSRMAPSSPPPDQSAATESSNLGLGNGNGGARSKKPAWNKPSNGVLKTAPVMDAVSWPALSESTKASPKLSADSSSKLTANGSVSTPQELPSNPKSNSAPNSSPSLQRSTKRGGGGNSASGPARSGFAHPPPPPPPPPFPVFAIPLNNYGNQVPIVPDPSLRDSSYRSNNWEPRAVGAFVPQPQTVIDHRNSSRRGNFGPQSRGDGPYYNNPGGRRDSERGNYSNGRDAHLQQQRPPPRGFVRHPSPYTPAFLTPQPIRPPLGNPIAFPDYVYGPPLHEPFRGVPFMLPPPMIFPFPDTPLPSLILVQIEYYFSDANLVKDDYLKLNMDDQGWVPVSLIAGFPRVKNLTNNIQLILESLRGSTIVEVQNDKLRRRNEWMNWIPSSNQPGIDSATGESSNSINRLSTSVQKITVGEGDNQSRHNDPDAEAVIDRTTELAGHAQLPNGDVNPSGSSPIHSSLSE 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26973872 26977568 + BLOR04896 Blo12g00877 68138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00877 538 PANTHER LUPUS LA PROTEIN-RELATED 10 505 IPR045180 -
Blo12g00877 538 SMART la 375 453 IPR006630 -
Blo12g00877 538 MobiDBLite consensus disorder prediction 522 538 - -
Blo12g00877 538 MobiDBLite consensus disorder prediction 53 67 - -
Blo12g00877 538 Pfam La domain 381 436 IPR006630 -
Blo12g00877 538 MobiDBLite consensus disorder prediction 1 16 - -
Blo12g00877 538 MobiDBLite consensus disorder prediction 136 219 - -
Blo12g00877 538 Gene3D - 373 462 IPR036388 -
Blo12g00877 538 MobiDBLite consensus disorder prediction 251 319 - -
Blo12g00877 538 ProSiteProfiles La-type HTH domain profile. 371 460 IPR006630 -
Blo12g00877 538 MobiDBLite consensus disorder prediction 136 192 - -
Blo12g00877 538 MobiDBLite consensus disorder prediction 493 509 - -
Blo12g00877 538 PANTHER LA-RELATED PROTEIN 1B 10 505 - -
Blo12g00877 538 SUPERFAMILY Winged helix DNA-binding domain 367 460 IPR036390 -
Blo12g00877 538 CDD LAM 381 451 - -
Blo12g00877 538 MobiDBLite consensus disorder prediction 1 123 - -
Blo12g00877 538 MobiDBLite consensus disorder prediction 489 538 - -
Blo12g00877 538 MobiDBLite consensus disorder prediction 261 275 - -
Blo12g00877 538 MobiDBLite consensus disorder prediction 202 219 - -
Blo12g00877 538 MobiDBLite consensus disorder prediction 68 103 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00877 K18757 LARP1; la-related protein 1 - tcc:18591599 522.316
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00258 Blo-Chr6:13600650 Blo12g00877 Blo-Chr12:26973872 5.77E-62 dispersed
Blo08g00142 Blo-Chr8:1507410 Blo12g00877 Blo-Chr12:26973872 4.67E-24 dispersed
Blo08g00223 Blo-Chr8:2612203 Blo12g00877 Blo-Chr12:26973872 1.71E-23 dispersed
Blo08g00224 Blo-Chr8:2612987 Blo12g00877 Blo-Chr12:26973872 5.12E-66 dispersed
Blo12g00877 Blo-Chr12:26973872 Blo14g00826 Blo-Chr14:28924949 1.99E-10 dispersed
Blo12g00877 Blo-Chr12:26973872 Blo05g00696 Blo-Chr5:23441666 6.67E-97 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1168 . Blo12g00877 . Bda03g00295 . . Bma04g00255 . . . Cma01g01985 . Car01g01556 . . . . . . . . . . . . . . . . . . . Cone7ag1906 Cone17ag1422 Cone20ag0060 Lsi04g01766 Csa03g04297 Chy04g00400 . . . Bda08g01199 Bda01g01544 Bpe02g01740 Bpe05g00153 . Bma05g00183 Sed13g1555 Cmo01g02043 . . . . . . Cpe02g00060 Bhi09g02069 Tan01g5044 Cmetu04g1063 . . Mch11g0099 . . . . . . . . . . . Cme04g00449
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003873 7 2 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00877 Blo_Chr12 FPKM 16.579138 19.704319 17.141163 17.600874 50.7631 53.027653 53.40337 26.076685 29.919157 26.319096