Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00878 ATGATTACGTTTATAAAGTTCCCTTTCTCCTCCCCCGCCATTTTCTTCAACGCCGGAATTCTCTGTGAGGGAAGCCTAACTCCGTCGGCTTTAGCGATGCAACAAAGAGATTATAGTCCCGCTCCATATTACCAATACCCTCACATCCCAAGCTCTAATCCTATCCCCAATTCAACTTCCACTTCCGCCGATCTCCACCAAACCCCTTACGCCTCTGCTCCTCCCTTTTCCACCAATTACGCTCCCATTCCCTCCGATTACCCCCCGTACCCCTCTAATAATTACTCTTCCTATTCTCAAAATTCCGATCATCTCCCTGTCTCCCCCACTGCTCCCACCTATACTCCTTCCTCCAACCCTAATCTCCACCCGTTTGATCCCACTCCTCAGTCTTCTCCTTTCCCTACGTTTGAATCGCACGTTCCTTTTCAATCTCCGCCACAGCAGCAGTCTTATTATCCACCTTTCGATCAGCCTTCGACGGCTCACAATTATGCCCCTTCATCCTCCACTGTTCCCAACAAATCTACCTCCAATCCGACTCCGAGTTCCAATTCTCTGTACTCATCCGAGCAATATGCTCCATTTGGATCCTCCATGCCGCCTGCCTATGGGAATCCCTGCGATTATTCTGTAAAATTGGAACAGGGCAGTGGATATGTTGATAATAAATATGGAAATTACAATGAAAGCATATCTGGTTTCGGTTCGGATCTGTATGGGAAGAAGACGGATAATGGTGTATCACGCTATGAGTCAAGTTATGATGATGGCTTTGGGGATGGTGTGTATGCCTACCAAGGGGGCAAGGTTGAGCCATATGGAGCTCGTGGTACCGCCCCTAAGTCATCCACATGGACAGGATTCGATGATTATGGGAGGCCAATCAGTTTTCTTGCCGGGAAAGGCGCTTCCGGAGGTTCCAGCAAGATTGTGAGAGCCACTCCAACGGCGGATACACAAGAAGACGTCAAGAGTGGTGTGCAAAAGTTCCGGGTTAAGCTTTTGGCTGAGAGCGGAGGTCAGACTGCCACGGATGTTCTCTGTCAGATTGGTTTAGATGGAATTCGTATGCTTGATCCAAATACTGGTCGAACACTGAGAATTTATCCTCTTGAGACAATTACAAAATGTGAAGTGGCAGAGTCATCCACTTTGGCGATTTGGTCTAAGAGCTCAGTGGATATTGAGCCGCGGAGGATAAGGTTGCTGTCCAGTAGTTATACTACTAATACTCTTTTGGACACAGTGACTGCAGCAACGGTACAGTTTAAGGAGATGGGGGGAAGAAGCAGGGCACCTGATTCTTTTAGGTCTAGTGAACAGTCTGTAGAAAGAAAGAAAGGATTTGGTGATTGGATGAACAAGATGAAGCCTGGAAATGTGGAAAAAGATCATTGGGTGCCTGATGAAGCTGTTTCTAAGTGCACATCTTGCGGAACTGATTTTAGCGCTTTTCTGCGCAAGCATCACTGCAGGAACTGTGGAGATATTTTCTGTGACAAATGCACTCATGGTCGAATTACTCTAACTTCTGAGGAGAATGCTCCTCAAGTCCGTGTTTGTGACAGATGCATGGCAGAAGTAACTCAGAGGCTGACTAATGCTAAAGAAGCAGCTAGTAAGCCTACAGAATTTCAGAGTCATGAGGATCTGGCCAAGAAACTTCTGGAAGAAATGGAAAGAAACCGCAGGTCATCAGGTTCCAGATCTGACGGTCCTGGCAAGCGAATGAAGGAAGTTGCCTGCCCCACCTGCACTGTTCATTTGCAGGTAGGTTTCGGGAAGGGGGAAATTGTTCCGAGCAACGATTCGATGTCGCCTGTGAAGATTACTTTGAAGAGCTCCGATGGGGAGACTTTCGAGGTTGACGAGGCTGTTGCTTTGGAATCGCTCACGATTAAACATTTGATCGAGGACGATTGTGCCGACAGTGGGATTCCACTCCCCAACGTTACCAGCAAGATCTTGTCCAAGGTTATTGAGTACTGCAAGAAGCATGTCGACTCCACTAAGTCTGAAGATCGTGCTTCCACTGCCGATGAGGATCTCAAGACTTGGGACCACGAGTTCGTCAAGGTTGATCAGGCCACGCTATTTGACCTCATCCTGGCTGCTAACTATCTGAACATCAAGAGCTTGCTGGATCTGACATGCCAGACTGTTGCTGACATGATAAAGGGAAAAACACCAGAGGAGATCCGCAAGACATTCAACATTAAGAATGACTTCACGCCTGAGGAAGAGGAGGAGGATTGTGACTTGGGGAGTGTTAACAGAAGCAGCAATTCCAGAAACGCGAGGGCAGGGTCCATGGAAGAAGTTCCGTACATGGTATTGACGAATGGAGGTTCTTCCTCTTCTGGAACTAATGTTTTCTGTAATTGGGATCAGTGGGTAATGATTGATTACTTGGTGCACCGCATAGAACAGCGGATGGCAGACCACAATCGTTTCATGCAGCACCGCATGGAACAGTCCAATAGCAGTCGGATATTCAATTCGAAGAAGTATGTGCCAAGCGATTACGATAAGACGTGGACCCAATACGCAATCGAATCATCAAAGGGTGCCACAATTGCAGAGCCAGTAGAGGCGGCATCCTATGCACGCTGTATATCCTTGGTTGGTGCCGATTAA 2640 47.5 MITFIKFPFSSPAIFFNAGILCEGSLTPSALAMQQRDYSPAPYYQYPHIPSSNPIPNSTSTSADLHQTPYASAPPFSTNYAPIPSDYPPYPSNNYSSYSQNSDHLPVSPTAPTYTPSSNPNLHPFDPTPQSSPFPTFESHVPFQSPPQQQSYYPPFDQPSTAHNYAPSSSTVPNKSTSNPTPSSNSLYSSEQYAPFGSSMPPAYGNPCDYSVKLEQGSGYVDNKYGNYNESISGFGSDLYGKKTDNGVSRYESSYDDGFGDGVYAYQGGKVEPYGARGTAPKSSTWTGFDDYGRPISFLAGKGASGGSSKIVRATPTADTQEDVKSGVQKFRVKLLAESGGQTATDVLCQIGLDGIRMLDPNTGRTLRIYPLETITKCEVAESSTLAIWSKSSVDIEPRRIRLLSSSYTTNTLLDTVTAATVQFKEMGGRSRAPDSFRSSEQSVERKKGFGDWMNKMKPGNVEKDHWVPDEAVSKCTSCGTDFSAFLRKHHCRNCGDIFCDKCTHGRITLTSEENAPQVRVCDRCMAEVTQRLTNAKEAASKPTEFQSHEDLAKKLLEEMERNRRSSGSRSDGPGKRMKEVACPTCTVHLQVGFGKGEIVPSNDSMSPVKITLKSSDGETFEVDEAVALESLTIKHLIEDDCADSGIPLPNVTSKILSKVIEYCKKHVDSTKSEDRASTADEDLKTWDHEFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEDCDLGSVNRSSNSRNARAGSMEEVPYMVLTNGGSSSSGTNVFCNWDQWVMIDYLVHRIEQRMADHNRFMQHRMEQSNSSRIFNSKKYVPSDYDKTWTQYAIESSKGATIAEPVEAASYARCISLVGAD 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26978764 26989993 - BLOR04897 Blo12g00878 68139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00878 879 MobiDBLite consensus disorder prediction 91 190 - -
Blo12g00878 879 MobiDBLite consensus disorder prediction 91 121 - -
Blo12g00878 879 Pfam FYVE zinc finger 466 530 IPR000306 GO:0046872
Blo12g00878 879 Pfam Skp1 family, dimerisation domain 712 751 IPR016072 GO:0006511
Blo12g00878 879 Pfam Skp1 family, tetramerisation domain 610 668 IPR016073 GO:0006511
Blo12g00878 879 SUPERFAMILY POZ domain 610 670 IPR011333 -
Blo12g00878 879 CDD BTB_POZ_SKP1 610 726 - -
Blo12g00878 879 SUPERFAMILY Skp1 dimerisation domain-like 684 751 IPR036296 GO:0006511
Blo12g00878 879 MobiDBLite consensus disorder prediction 559 577 - -
Blo12g00878 879 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 470 530 IPR017455 -
Blo12g00878 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 457 538 IPR013083 -
Blo12g00878 879 PANTHER PROTEIN FREE1 33 593 - -
Blo12g00878 879 PANTHER PROTEIN FREE1 33 593 IPR045893 GO:0036258|GO:0043130
Blo12g00878 879 SUPERFAMILY FYVE/PHD zinc finger 465 546 IPR011011 -
Blo12g00878 879 MobiDBLite consensus disorder prediction 49 71 - -
Blo12g00878 879 MobiDBLite consensus disorder prediction 50 71 - -
Blo12g00878 879 SMART fyve_4 462 531 IPR000306 GO:0046872
Blo12g00878 879 MobiDBLite consensus disorder prediction 132 147 - -
Blo12g00878 879 CDD FYVE_EEA1 467 529 - -
Blo12g00878 879 Gene3D Potassium Channel Kv1.1; Chain A 606 754 IPR011333 -
Blo12g00878 879 MobiDBLite consensus disorder prediction 154 190 - -
Blo12g00878 879 SMART skp1_3 608 711 IPR001232 GO:0006511
Blo12g00878 879 MobiDBLite consensus disorder prediction 559 578 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00878 - - - mcha:111008454 742.265
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g00571 Blo-Chr4:4921476 Blo12g00878 Blo-Chr12:26978764 1.36E-74 dispersed
Blo06g01134 Blo-Chr6:34792600 Blo12g00878 Blo-Chr12:26978764 3.88E-15 dispersed
Blo12g00878 Blo-Chr12:26978764 Blo13g00501 Blo-Chr13:26333179 6.18E-43 dispersed
Blo16g00864 Blo-Chr16:36173383 Blo12g00878 Blo-Chr12:26978764 5.00E-11 dispersed
Blo10g00658 Blo-Chr10:20731977 Blo12g00878 Blo-Chr12:26978764 2.82E-64 transposed
Blo01g01608 Blo-Chr1:55967121 Blo12g00878 Blo-Chr12:26978764 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1153 . Blo12g00878 Bda01g00473 . Bpe02g00338 Bpe04g00253 Bma04g00253 Bma01g02381 . . Cma01g01984 Cma09g00093 Car01g01555 . . Cpe06g00055 . . . . . . . . . . . . . . . . . . . Lsi04g01762 Csa03g04294 Chy04g00402 . . . . . . . . . Sed01g2478 Cmo01g02042 . . . . Car09g00080 . Cpe02g00061 Bhi09g02071 Tan01g5041 Cmetu04g2661 . Hepe01g1602 Mch11g0101 . . . . . . . . . . . Cme04g00455
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005990 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00878 Blo_Chr12 FPKM 3.031304 3.217347 3.667856 3.411218 5.672692 6.779908 5.934388 2.707335 2.647739 2.392523