Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00880 ATGTTTGAAAGAAATGAGGCGAAGGAAGGAAGCGTAATCCGGGTGATGGCAGAGAGTCACGTCCGTATGGTGTACAGTGGGACCCATCAAAACCCCGAAGGCAGTGGGACTTCTGTTTTAAGCACCCATTTGATGCCTGATTCACCACACAAGTTAACGCTACATTGCCGCTCTCTCTTCCGTAGAAACTTGAGCGAAGATCGCGCCATGAGTAGCTTCACCGTTTCTGTTCATGGCTTCTCCGTTTTCTTCCTCGTTTCCCTTTTCGTCTCTTCTTCCTTTGCCGACAGTGACTTACAAGCACTGTTGAAGTTCAGAAGCGCCTTGATTGAACCTCATGGTTCTGGGTTGGATGATTGGGTGAACTTGTCCTCAGCCTCGTCTTCCCCTTCCCTCCACTGCTCTTTCTCCGGCGTGTCGTGCGATGCTGATTTCAGAGTAGTCGCGCTTAATGTCTCCAATCTCTCCCTGGTTGGTTCGATTCCTCCTGAGATTGGGCTGTTTGATAAGCTCGTGAACCTGACGATGATCTTCGACAATCTCACCGGTCAGCTTCCCGTCGAAATGGCCAAGCTCGTTTCTCTCAAGAACCTTAACGTCTCCAGCAATGTGTTAACCGGTAATTTTCCCGGAGAAATCATTTTAACTATGAAGGAGCTCGAGGCGCTCGACGTTTATAACAACAATTTCACCGGAACGCTTCCATTGGAGATCGTCAAGCTCAAGAAGCTAAATCATCTCAACCTCGGTGGAAACTTCTTCACCGGAGAGATTCCGGAAGCTTACTCGGAGATTCAGAGCTTGGAGTTCTTGGGCTTGAGTGGGAATGCACTCACCGGCAAGCTCCCGCCGAGTTTATCTAGGCTGAAGAATCTGAAAAAACTTTATGCCGGTTACTTCAACGCCTACGAAGGGGGAATACCTCCGGAGTTTGGAGCGTTGAGTAACCTCGAACTTCTTGACTTGGGTAGCTGTAATCTCACCGGGGAAATTCCAACGAGCCTAAGCCTCTTAAAACATATGCACTCGCTGTTTCTGCAAGTCAATCGACTCACTGGCCGTATTCCTTCGGAGTTTTCTGGGTTGATTAGCTTGAAATCGCTCGATCTTTCTATTAACGAACTAACCGGAGAGATACCAGAAAGTTTTGCGGCGCTCCAGAATATTACACTTATTAATCTGTTTAAGAACAAGCTTCACGGTCCAATTCCTTCATTTATCGGAGACCTTCCAAACCTCGAAGTGCTTCAAATTTGGGAGAATAACTTCACGCTTCAGCTCCCACCAAATCTTGGACGAAACGGGAAGCTTCTCTATTTCGACGTAGCCACGAATCACCTTACTGGAACCATTCCTCCGAACTTGTGCTTGGGCGGAAAATTGAAGACTATGATTGTTTTGCGAAATTACTTCTTCGGACCAATCCCTGAAGAATTTGGCCGCTGCAAATCACTGACTAAAATTAGAATGACGAAGAATTACTTAAACGGTACGATTCCTGCAGGATTTTTTGACATGCCGGAACTGACTTTGATCGAGTTGAGTGATAACTATTTTTCTGGCGAACTCCCATTGCAAATTTCTGGTGATTCTCTTGGACTTGTCACATTGTCCAACAATAGAATTACTGGAAAAATTCCTCCGGCCATTGGAAATCTGAAGAACTTGCAGGTATTGTCGCTGGAAATGAATGAATTCACTGGGGAAATTCCTAGAGAACTATTTGAATTGAAAATGCTTTTGAAAATCAACATGAGCTCCAATGATATCAGAGGTGAAATCCCAAACTCGATGTCTCAATGCAATTCTCTAACCGCATTCGATCTAAGTCACAACAAGCTCGTTGGAGAAATTCCTCAAGGGATTGCGAAGTTGAAAACTTTGAGCATATTCAATATTTCAGGCAACCAACTCACCGGCGAAATACCAAGTGAAATCCGATCGATGACAAGCCTTGCTACTCTGGATCTTTCAGATAACAATTTCTTCGGGAATGTTCCCTCTGGTGGCCAATTTTCCATCTTCAACGAAAGCTCTTTCACTGGGAATCCTGGCCTCTGTCTGTTCCGTAACAGTAGTTGTCCGTCTCTACCATACCATGCGAAAGACTCTGATAGGAGTCAGAAGAAAATCAAATCCTCCAAGATCATCATAGCTATTATTGCTACCATTGCCATCACTACTGTTCTGTTATTCTTACTAGTCACTGCTTATACGATGAAGAAGATGTTGCAGAAATCTGAAGCATGGAAGCTCACTGCTTTCCAAAAACTGAATTTTAAGGTGGAAGACGTTGTGGAGTGCATGAAAGAAGAGAATATCATTGGAAAAGGTGGTGCTGGAATTGTGTACCGAGGATCCATGCCGGATGGTCTTGAAGTAGCGATCAAACGGTTGGTTGGTCGAGGAATGGGAAGGAGCGACCATGGTTTTGCAGCGGAAATCCAGACTTTAGGCCGAATCAAGCACCGAAATATTGTCAGACTTTTAGGGTATGTATCGAACAAGGAGAACAATCTTTTACTTTACGAGTACATGAACAATGGAAGCTTGGAGCAGATGTTACATGGAGCAAAAGGCGGCCATTTACAGTGGGATTTGAGGTACAAGATCGCCATTGAAGCAGCTAAAGGTCTCTGTTATCTTCACCATGATTGTATTCCTCTGATCATTCACAGAGACGTGAAATCGAACAACATTTTGCTCGATTCAGACTACGAAGCTCATGTTGCTGATTTTGGACTCGCAAAATTCTTGCGAGAGGCTGGCGCCTCTGAATGCATGTCCTCCATAGCTGGCTCCTATGGCTACATTGCTCCAGAGTATGCTTACACGCTGAAGGTGGACGAGAAGAGCGACGTATACAGCTTCGGAGTAGTGCTGCTTGAGCTGGTGACCGGAAGAAAGCCGGTGGGGGAGTTCGGAGATGGAGTGGATATAGTGAGGTGGGTAAGAGAAACCACAATGGAGATGTCTCAGCCGTCTGATGCGGCGTCAGTTCTGGCGGTGGTGGATCGCAGGCTCTGTGGGTACCCACTGACAAGTGTCATCCATCTGTTTATGATAGCCATGATGTGCGTCGAGGAAGAAAGTTCTTCAAGGCCTACTATGAGGGAGGTTGTACACATGCTCACTAACCCACCACCACCACCTCCTCCTCTCCCCGCCGCTGCTCAAACCCAACTCATCAATTTTTAG 3198 45.93 MFERNEAKEGSVIRVMAESHVRMVYSGTHQNPEGSGTSVLSTHLMPDSPHKLTLHCRSLFRRNLSEDRAMSSFTVSVHGFSVFFLVSLFVSSSFADSDLQALLKFRSALIEPHGSGLDDWVNLSSASSSPSLHCSFSGVSCDADFRVVALNVSNLSLVGSIPPEIGLFDKLVNLTMIFDNLTGQLPVEMAKLVSLKNLNVSSNVLTGNFPGEIILTMKELEALDVYNNNFTGTLPLEIVKLKKLNHLNLGGNFFTGEIPEAYSEIQSLEFLGLSGNALTGKLPPSLSRLKNLKKLYAGYFNAYEGGIPPEFGALSNLELLDLGSCNLTGEIPTSLSLLKHMHSLFLQVNRLTGRIPSEFSGLISLKSLDLSINELTGEIPESFAALQNITLINLFKNKLHGPIPSFIGDLPNLEVLQIWENNFTLQLPPNLGRNGKLLYFDVATNHLTGTIPPNLCLGGKLKTMIVLRNYFFGPIPEEFGRCKSLTKIRMTKNYLNGTIPAGFFDMPELTLIELSDNYFSGELPLQISGDSLGLVTLSNNRITGKIPPAIGNLKNLQVLSLEMNEFTGEIPRELFELKMLLKINMSSNDIRGEIPNSMSQCNSLTAFDLSHNKLVGEIPQGIAKLKTLSIFNISGNQLTGEIPSEIRSMTSLATLDLSDNNFFGNVPSGGQFSIFNESSFTGNPGLCLFRNSSCPSLPYHAKDSDRSQKKIKSSKIIIAIIATIAITTVLLFLLVTAYTMKKMLQKSEAWKLTAFQKLNFKVEDVVECMKEENIIGKGGAGIVYRGSMPDGLEVAIKRLVGRGMGRSDHGFAAEIQTLGRIKHRNIVRLLGYVSNKENNLLLYEYMNNGSLEQMLHGAKGGHLQWDLRYKIAIEAAKGLCYLHHDCIPLIIHRDVKSNNILLDSDYEAHVADFGLAKFLREAGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVRWVRETTMEMSQPSDAASVLAVVDRRLCGYPLTSVIHLFMIAMMCVEEESSSRPTMREVVHMLTNPPPPPPPLPAAAQTQLINF 1065
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27009320 27012946 + BLOR04899 Blo12g00880 68141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00880 1065 PANTHER RECEPTOR PROTEIN KINASE CLAVATA1 77 1051 - -
Blo12g00880 1065 Pfam Leucine rich repeat 340 399 IPR001611 GO:0005515
Blo12g00880 1065 Pfam Leucine rich repeat 603 662 IPR001611 GO:0005515
Blo12g00880 1065 SMART LRR_typ_2 265 289 IPR003591 -
Blo12g00880 1065 SMART LRR_typ_2 314 338 IPR003591 -
Blo12g00880 1065 SMART LRR_typ_2 362 385 IPR003591 -
Blo12g00880 1065 SMART LRR_typ_2 553 577 IPR003591 -
Blo12g00880 1065 SMART LRR_typ_2 410 434 IPR003591 -
Blo12g00880 1065 ProSiteProfiles Protein kinase domain profile. 769 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo12g00880 1065 SUPERFAMILY L domain-like 445 690 - -
Blo12g00880 1065 Gene3D Ribonuclease Inhibitor 97 214 IPR032675 -
Blo12g00880 1065 SUPERFAMILY Protein kinase-like (PK-like) 760 1044 IPR011009 -
Blo12g00880 1065 ProSitePatterns Serine/Threonine protein kinases active-site signature. 890 902 IPR008271 GO:0004672|GO:0006468
Blo12g00880 1065 Gene3D Ribonuclease Inhibitor 302 461 IPR032675 -
Blo12g00880 1065 SUPERFAMILY L domain-like 267 526 - -
Blo12g00880 1065 Gene3D Transferase(Phosphotransferase) domain 1 846 1048 - -
Blo12g00880 1065 Pfam Protein tyrosine and serine/threonine kinase 772 1044 IPR001245 GO:0004672|GO:0006468
Blo12g00880 1065 PANTHER UNNAMED PRODUCT 77 1051 - -
Blo12g00880 1065 Pfam Leucine Rich Repeat 316 336 IPR001611 GO:0005515
Blo12g00880 1065 Gene3D Ribonuclease Inhibitor 462 570 IPR032675 -
Blo12g00880 1065 Gene3D Ribonuclease Inhibitor 215 301 IPR032675 -
Blo12g00880 1065 Gene3D Ribonuclease Inhibitor 571 695 IPR032675 -
Blo12g00880 1065 Pfam Leucine rich repeat N-terminal domain 95 142 IPR013210 -
Blo12g00880 1065 SUPERFAMILY L domain-like 128 299 - -
Blo12g00880 1065 SMART serkin_6 769 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Blo12g00880 1065 Gene3D Phosphorylase Kinase; domain 1 734 845 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00880 Blo-Chr12:27009320 Blo16g00327 Blo-Chr16:8475280 0 dispersed
Blo12g00880 Blo-Chr12:27009320 Blo05g00722 Blo-Chr5:25244562 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84599 PF07714 PK_Tyr_Ser-Thr 4.60E-45 CL0016 Blo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00880 K00924 - tcc:18591578 1360.9