Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00882 ATGAATGGATTAGTAAGATTATCATTCTCACTTACATTTGCGTTTGAATTTGTAGTATACGCACAAAGCGGCATTCTCAGGAATAGGGAGGGGGCAATCGCGGTAGGGTTAGACAAGACTGTAAAAGTTTTAGGCATAATCGGAAATAGTTTATCGTATCTGAACACCAGAAGCCGGTTTGTGACAGGCGTGGCTCCAAAGTCAAGTAGAATTTCTGTTCTAGCTTTTGAAGTGGCAAACACGATAGCAAAAGGGGCAAACTTATCAGAGTTTCTTTTGGAAGAAAATATACAGTTCTTGAGGAAGGAGATTCTAGAATCTGATGCAGTTAAGCTTTTAGTCTCTAATAATATGGAGGAGTTGCTAAATATAGCTGCTGATGACAAAAGGTGGGAGTTTGATATTTTTTTGGAAGAAGTTATACGATTTGGGAATTTATGTTGGAATCCTCTTTGGCACAATTTGGATCCTTACTTTTCGAGGAGAAGTTACCGCAGTTCTCGAACGGGAGCTAAATATCCAAAGAAAGGTTGTCAAAAGCTTGAAAAAGGAATCTCTTTGGTCGAGAAATTTGGAAGAGATCGCCCTTCCTTTGTTCCTTCTAACACGAGGGACGCGTTATTTCATAGATTACTTGAGAGTGTTAAAACATCTTTACGGCCTCGATTGCGGGATGTTCTTGTAAAGGAAGAGGGTGCCAAGAAAATACCAAGTCAGCTATATCACAACATTTTGGCATTCTATAAATACGCCTTCCATTCTGATTTTGTAGCACTGCATCCTCTTCCTCCTCTCTTCTGTCCTCTTCTTCTTCAGCAAGCGCCACGGTTACTCATTCTCTTGGCTTTTAAGCTCTTCATGCCAGGAGTATTCTCTACGACGTTCACGATAGTAAACAAATGTGACTACACAGTTTGGCCTGGCATTTTATCCAACGCTGGAATCGCACCGCTTTCCACCACCGGCTTCGTACTTCAGACCGGCGAGTCTAAAATTCTCAACGCACCGACTTCGTGGGGTGGTCGCTTCTGGGGAAGAACTTACTGCTCCGAAGACTCCACTGGAAAGTTCTCGTGCGTAACAGGTGATTGTGGCTCTAGTAAGGTAGAATGTGCCGGAAATGGAGCCGCACCGCCTGCCACTCTCGCCGAATTCACTTTAGATGGCTATGGGGGACTTGATTTCTTCGATGTTAGCTTAGTCGACGGGTACAACCTCCCCATGATGGTGGTTCCGCAGGGAGGCACTGGTGAGAAGTGCACGAGCACGGGGTGCGTGGTGGATCTGAACAGCTCGTGTCCGTCGGAGCTGAAGGTGACGAGCGTGGACAGCAACGAAAGCGTGGCATGTAAAAGCGCTTGTGAAGCATTTGGGAAGCCGGAATATTGCTGCAACGGCCCTTACAGCACACCCGACACATGCCAGCCGTCGTCTTACTCTCAAATGTTCAAATCCGCGTGCCCCCGCGCATACAGCTACGCCTACGACGATACGACGAGTACCTTCATATGTGCATCTGCTGATTATACTATCACTTTCTGCCCATCTCCGACCACCAGTCAAAAGTCATCGCAGGGCTCTTCGACCAACGGCACAATGGTGTACGAAGGTGCAGAGTTATACAAGAGTGGCGCATCGTCATTCTCCACGGTCGGCCTTTTATCCGGAGGCAGTTCTTTTGTGGGCGTGCTCGTCTTCGCTCTGGCAATTCATCAGATAGTCTAA 1725 46.61 MNGLVRLSFSLTFAFEFVVYAQSGILRNREGAIAVGLDKTVKVLGIIGNSLSYLNTRSRFVTGVAPKSSRISVLAFEVANTIAKGANLSEFLLEENIQFLRKEILESDAVKLLVSNNMEELLNIAADDKRWEFDIFLEEVIRFGNLCWNPLWHNLDPYFSRRSYRSSRTGAKYPKKGCQKLEKGISLVEKFGRDRPSFVPSNTRDALFHRLLESVKTSLRPRLRDVLVKEEGAKKIPSQLYHNILAFYKYAFHSDFVALHPLPPLFCPLLLQQAPRLLILLAFKLFMPGVFSTTFTIVNKCDYTVWPGILSNAGIAPLSTTGFVLQTGESKILNAPTSWGGRFWGRTYCSEDSTGKFSCVTGDCGSSKVECAGNGAAPPATLAEFTLDGYGGLDFFDVSLVDGYNLPMMVVPQGGTGEKCTSTGCVVDLNSSCPSELKVTSVDSNESVACKSACEAFGKPEYCCNGPYSTPDTCQPSSYSQMFKSACPRAYSYAYDDTTSTFICASADYTITFCPSPTTSQKSSQGSSTNGTMVYEGAELYKSGASSFSTVGLLSGGSSFVGVLVFALAIHQIV 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27019113 27024787 - BLOR04901 Blo12g00882 68143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00882 574 PRINTS Pathogenesis-related protein signature 505 514 IPR001938 -
Blo12g00882 574 PRINTS Pathogenesis-related protein signature 342 353 IPR001938 -
Blo12g00882 574 PRINTS Pathogenesis-related protein signature 294 306 IPR001938 -
Blo12g00882 574 PRINTS Pathogenesis-related protein signature 394 410 IPR001938 -
Blo12g00882 574 Gene3D Thaumatin 293 515 IPR037176 -
Blo12g00882 574 Pfam Thaumatin family 299 515 IPR001938 -
Blo12g00882 574 Pfam Domain of unknown function (DUF3475) 73 129 IPR021864 GO:0045927
Blo12g00882 574 ProSiteProfiles Thaumatin family profile. 292 515 IPR001938 -
Blo12g00882 574 PANTHER OS03G0233200 PROTEIN 281 536 IPR001938 -
Blo12g00882 574 SMART tha2 295 515 IPR001938 -
Blo12g00882 574 PANTHER BNAA02G17480D PROTEIN 281 536 - -
Blo12g00882 574 CDD TLP-PA 294 514 - -
Blo12g00882 574 SUPERFAMILY Osmotin, thaumatin-like protein 293 516 IPR037176 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01603 Blo-Chr1:55891279 Blo12g00882 Blo-Chr12:27019113 9.02E-170 dispersed
Blo02g00698 Blo-Chr2:21307192 Blo12g00882 Blo-Chr12:27019113 1.76E-108 dispersed
Blo04g00882 Blo-Chr4:10098299 Blo12g00882 Blo-Chr12:27019113 9.75E-95 dispersed
Blo05g00709 Blo-Chr5:24415784 Blo12g00882 Blo-Chr12:27019113 6.18E-111 dispersed
Blo12g00882 Blo-Chr12:27019113 Blo16g00082 Blo-Chr16:2209602 4.90E-92 dispersed
Blo18g00778 Blo-Chr18:22223253 Blo12g00882 Blo-Chr12:27019113 1.89E-22 dispersed
Blo18g00825 Blo-Chr18:24351434 Blo12g00882 Blo-Chr12:27019113 4.57E-79 dispersed
Blo03g00473 Blo-Chr3:15956271 Blo12g00882 Blo-Chr12:27019113 1.02E-85 transposed
Blo01g01602 Blo-Chr1:55882562 Blo12g00882 Blo-Chr12:27019113 1.47E-08 wgd
Blo12g00882 Blo-Chr12:27019113 Blo18g00776 Blo-Chr18:22182084 9.67E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00882 - - zju:107420415 435.647