Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00883 ATGAAGAGGATTGTGTTGTTGTTGTCGTCGTCGTCGTCGTCGATAGGCATGGCAGATTCAAAGGCTATGGCTGCTTCTCTTCTCTTTCTTCTTCTTCTTCTTCATGAAGCTGAAGCTGATGAACTGGTAAGGACCGCCCATGGACGAAGGACAGCTGCTTCTCCCCAAATCGACTGTGTTGGAGCCTGTGCTGGCCGGTGTCGGTTAGCGTCTAGGCAGAAGATGTGCAGGAGGGCGTGTGGAACTTGCTGCAACCGGTGCAAGTGCGTCCCACCAGGAACGTCGGACGGTGGTGGAGCTTCCGTAGCCAGATGCTCTCGATCATCGAGGCCAAACCTGCGCAAGAGGGCGTGCGGAAGCAGCCGCGTGCCTGCCGGCACTTGCGGCAACTTCGAGACCTGCCCTTGCTACGGTCTAAATAATGATGATGGAGGAGTCGATTTATCATTTGATAAATCAAAGAAAGAGAAGCTCAGAAGATTAAGTTTCATCGGTATAGTAAATCAGAAGCTCGAAGCCTGCGACATGGATTCTAATTTGTTAGATAGAGGGGATGAGACAGTAGGTAGCTGTAGGAAATATAAGCTTCCAAAAAAGTTTTTCAATGATGGCGACGGCGTCGATCAGGCCTCTGTTCCCCGAAAGCTTCGGTCAGCCATGAAAAAACGACATGGGGATTCTCTTTCTCCATCTCCACAAGATTCAAAAAAAGTGAAAGCTACAATAAGAGGCATCGAATCACTTAAAAGTGAAGATGTGAAGAAATCTAAACTGAGCATGAAACGAAGAAGCTTAGAACAAAAGCCATCTGGATTGGTGGATTCTGAGCAAATCACGAAAGATGAAGAAGAAGTAGTGGAAACCCTTTACGCTTTGGCTGGAATGTTTCCAACCAATGATGCAAATGAATCGAGTAAAATGGAATCTGAATCTTTAGTAAACTTGGACGCAAAGGGTAGTCCTTCTTTTGAATTTGAAGATTCTCCGGTTAAGGGCAATTTGCAACCAAATGTACCAGCAATGGCCATTGAAACATTAGGGAAAGAAACTGTGACAACTCTATCTCTGAATGAAACATGCGACACAGAACCATCTGATATCGGCAAAACGAACGAAATTGTATGTGAAATCGAGTTGCAAAACTCAGACGCAGCCCTTGACATTAGACAGTTTAAGCTTCATTACCAACCTGACACCTCTTCTTCCATGAGAAAACCAGTGATTCCACCCATGCAAGAGGTAATGCCTGTTGGAAGCTTACTGGAAGAACAGAATGTCAACACGGGGAAGAAGAAAAACAGTTTGGCATTGTGGCCAGGCTTGTCTCCACCAGTATTACACGATGCTGGAGGCAGCTATCAGTCAAAGTCTTATGTTAATGCTCCTTACCAGCTTGATTCTACTTCATTTATTGGCCAATTTGATGCAGAGGAAAATTGTTCTGGTGGGAAGGTTTCAAGATTAAAGGCTGATGGCAAATCGTGGAAGAAGTGTGCAGCTCATATTTACATAAGTCACCTAATTTCCACATTACAAGAAAGCAAAGACAGACTGCCGCCGCTGCTTAATCAATCAATTCCCCTTGAATCTTCTAAGCAAGGAAGTGCCATGGGAGCTAAGAGGGTGAGAAGTGACTTAAATGAAGTTGCTTCTGAAATTAAAGGGGTACAAAATAACATGGCTGGAAAGTACTCAAAGGACTCACAAAATGGTGTTTCTCACCTCAACCAGGATCCACTACAAAAGCAGAGCTTTGATTTCTTATCCTTGTCGACAAAAGTGGGTAACAGTTATAATAAGAGTGGAATTACATTGGAACCAATGACCCAACTCCACGTTCCTCGTATATACTCAGTTGGACAGCAGCCTAAACCGCCATTTTCTCTTCTGCAAGCTCACCATGACCAGCTATCTCTATCATCAGCCATATCACAGCAGGTGAAACTACCTCAACATCTGGGACGACAGATAAGTAGCCACTCTCATCCAAGTTCCACTGCATCAACAAAAGGACAGCCATGGCTATGGGCAGCTGAGCTGGCCGCTCGATACAGACCCGTAGAGACTACCACAAGCAATAGTGAAGTTCAGTGTTGGTTAAATGGAAGGAATTTCTACTCGAACTCATATGCCCCCTCAACCATCTCTGGAAGTTCCTTCCTCTAA 2166 44.92 MKRIVLLLSSSSSSIGMADSKAMAASLLFLLLLLHEAEADELVRTAHGRRTAASPQIDCVGACAGRCRLASRQKMCRRACGTCCNRCKCVPPGTSDGGGASVARCSRSSRPNLRKRACGSSRVPAGTCGNFETCPCYGLNNDDGGVDLSFDKSKKEKLRRLSFIGIVNQKLEACDMDSNLLDRGDETVGSCRKYKLPKKFFNDGDGVDQASVPRKLRSAMKKRHGDSLSPSPQDSKKVKATIRGIESLKSEDVKKSKLSMKRRSLEQKPSGLVDSEQITKDEEEVVETLYALAGMFPTNDANESSKMESESLVNLDAKGSPSFEFEDSPVKGNLQPNVPAMAIETLGKETVTTLSLNETCDTEPSDIGKTNEIVCEIELQNSDAALDIRQFKLHYQPDTSSSMRKPVIPPMQEVMPVGSLLEEQNVNTGKKKNSLALWPGLSPPVLHDAGGSYQSKSYVNAPYQLDSTSFIGQFDAEENCSGGKVSRLKADGKSWKKCAAHIYISHLISTLQESKDRLPPLLNQSIPLESSKQGSAMGAKRVRSDLNEVASEIKGVQNNMAGKYSKDSQNGVSHLNQDPLQKQSFDFLSLSTKVGNSYNKSGITLEPMTQLHVPRIYSVGQQPKPPFSLLQAHHDQLSLSSAISQQVKLPQHLGRQISSHSHPSSTASTKGQPWLWAAELAARYRPVETTTSNSEVQCWLNGRNFYSNSYAPSTISGSSFL 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27032481 27039462 + BLOR04902 Blo12g00883 68144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00883 721 PANTHER OS02G0121500 PROTEIN 123 706 IPR040305 -
Blo12g00883 721 MobiDBLite consensus disorder prediction 216 239 - -
Blo12g00883 721 Pfam Gibberellin regulated protein 58 96 IPR003854 -
Blo12g00883 721 Coils Coil 539 559 - -
Blo12g00883 721 MobiDBLite consensus disorder prediction 256 275 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00883 - - - jre:109000876 311.227
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00874 Blo-Chr2:33824643 Blo12g00883 Blo-Chr12:27032481 1.64E-20 dispersed
Blo12g00883 Blo-Chr12:27032481 Blo16g00078 Blo-Chr16:2155255 3.39E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1107 . Blo12g00883 . Bda03g00291 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1970 Cone7ag1886 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017253 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 6
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00883 Blo_Chr12 FPKM 9.59311 10.233973 9.062942 11.380284 29.25123 27.218184 30.537022 9.900026 11.16191 10.851531