Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00884 ATGTCTGTTGTCGCGTCATCACCCGCCGTCGGATCGTTTTCCATCACGCGATCCCGTCAGTTGGGAAAGCCTCGCTTTCGGATGGCCGTCCGATCTAGCAAAGTGATCGCCGTCGATCCGATCTTGACTAATTTTCAGAGTGACTCTGCCACTCCTTTGCCGGTTCTCCGCCACGTGGCTGATGCCATGGCCGCCGATATGAGAGCAGGCCTCGCCGTCGACGGCGGAAGCGATCTTAAAATGATTCTCAGCTACGTTCATAGTCTCCCTACTGGGAAGGAGAAAGGATTGTATTATGCATTGGATCTCGGAGGAACCAATTTTAGGGTGCTAAGAGTGCAATTGGGTGGAAAAGAAGACCGAGTAATTGCTACAGAATTTGAGCAAATGTCTATCCCACAAGACCTAATGTTTGCTACCTCCGAGGAGCTCTTTGATTTTATTGCATCTGGGCTGGCCAAATTTGCAGAGAAGGAGGGAGGCAAGTTTCATCTCACTCCTGGAAGACAAAGGGAGATTGGATTCACATTCTCTTTCCCTGTCAAACAGACTTCCATAGATTCTGGCATTCTAATTAAGTGGACAAAGGGTTTTGCTGTAACCGGAACGGCAGGAAGAGATGTCGTTGCTTGTCTCAATGAAGCCATGGAAAGGAGAGGACTAGAAATGCGAGTATCTGCACTGGTTAATGATACTGTGGGAACCTTAGCTGGGGCAAGGTATTATGACAAGGATGTCGTTGCTGCTGTAATTTTGGGCACGGGAACTAACGCGTGCTATGTCGAGCAAACGAGCAATATTCCTAAACTTCAAGGTCAACATTCTTCAGAAAAGACTGTAAGAATAATTTCCATATCTTCTTCTTTATACTTATTCTATTCAGACTGCTTAAATTTTCCTTGTTTTCTTCAGATTATAAATACAGAGTGGGGTGCATTCTCAAATGGCCTCCCTTTAAGCGCATTTGACCGAGAAATGGATGCTGCTAGTATCAATCCGGGCGAACAGATCTTTGAGAAGACGATTTCTGGTATGTATCTTGGAGAAATAGCTCGTCGAGTGATCGTCATGATGGCTGAACATGGAGCTCTGTTCGGTGAATCCTTTCCCGATAAACTATTGACTCCTTTCATTCTCAGGTATGATTCGGATATTTTGTTATTTGATCTTACTAAACTATCCACCGAATTATTTGTAGTGGAAGAGTCAAATTTAAGTGCAAAAAGGACGGTAATGGAGGTCTGTGATGCCGTAGCAAAGCGGGGAGGTCGACTGGCAGGAGCAGGGATTGTGGGGATTCTGCAGAAAGTGGAGGAAGATAGGAAAGGAGCCGTGTTTGGGAGGAGGGCGGTGGTGGCTATGGATGGAGGGTTGTATGAGAATTACCCTCAATACAGAAGATATCTTCGAGAGGCTGTAACAGAGCTTTTAGGAAGAGAAAGAGCAGAGAATGTGGTTATAGAGCACTCTAAAGACGGGTCTGGTATCGGCGCTGCTCTTTTGGCGGCTACAAATTCCATCTATGAACATGGTCATTAG 1539 45.81 MSVVASSPAVGSFSITRSRQLGKPRFRMAVRSSKVIAVDPILTNFQSDSATPLPVLRHVADAMAADMRAGLAVDGGSDLKMILSYVHSLPTGKEKGLYYALDLGGTNFRVLRVQLGGKEDRVIATEFEQMSIPQDLMFATSEELFDFIASGLAKFAEKEGGKFHLTPGRQREIGFTFSFPVKQTSIDSGILIKWTKGFAVTGTAGRDVVACLNEAMERRGLEMRVSALVNDTVGTLAGARYYDKDVVAAVILGTGTNACYVEQTSNIPKLQGQHSSEKTVRIISISSSLYLFYSDCLNFPCFLQIINTEWGAFSNGLPLSAFDREMDAASINPGEQIFEKTISGMYLGEIARRVIVMMAEHGALFGESFPDKLLTPFILRYDSDILLFDLTKLSTELFVVEESNLSAKRTVMEVCDAVAKRGGRLAGAGIVGILQKVEEDRKGAVFGRRAVVAMDGGLYENYPQYRRYLREAVTELLGRERAENVVIEHSKDGSGIGAALLAATNSIYEHGH 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27039823 27042230 - BLOR04903 Blo12g00884 68145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00884 512 SUPERFAMILY Actin-like ATPase domain 38 243 IPR043129 -
Blo12g00884 512 CDD NBD_sugar-kinase_HSP70_actin 100 262 - -
Blo12g00884 512 Gene3D - 84 502 - -
Blo12g00884 512 PANTHER HEXOKINASE-LIKE 1 PROTEIN-RELATED 305 508 - -
Blo12g00884 512 PANTHER HEXOKINASE-LIKE 1 PROTEIN-RELATED 14 283 - -
Blo12g00884 512 SUPERFAMILY Actin-like ATPase domain 245 505 IPR043129 -
Blo12g00884 512 ProSitePatterns Hexokinase domain signature. 173 198 IPR019807 GO:0004396|GO:0005524|GO:0006096
Blo12g00884 512 ProSiteProfiles Hexokinase domain profile. 36 503 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Blo12g00884 512 PANTHER HEXOKINASE 305 508 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Blo12g00884 512 PANTHER HEXOKINASE 14 283 IPR001312 GO:0001678|GO:0004396|GO:0005524|GO:0005536|GO:0005975
Blo12g00884 512 PRINTS Hexokinase family signature 99 115 - -
Blo12g00884 512 PRINTS Hexokinase family signature 411 433 - -
Blo12g00884 512 PRINTS Hexokinase family signature 173 198 - -
Blo12g00884 512 PRINTS Hexokinase family signature 336 358 - -
Blo12g00884 512 PRINTS Hexokinase family signature 225 241 - -
Blo12g00884 512 PRINTS Hexokinase family signature 488 504 - -
Blo12g00884 512 Pfam Hexokinase 44 241 IPR022672 GO:0005524|GO:0005975|GO:0016773
Blo12g00884 512 Pfam Hexokinase 248 503 IPR022673 GO:0005524|GO:0005975|GO:0016773
Blo12g00884 512 Gene3D - 62 491 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00884 K00844 HK; hexokinase [EC:2.7.1.1] - rcu:8274653 706.057
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g00528 Blo-Chr1:5814410 Blo12g00884 Blo-Chr12:27039823 3.54E-162 dispersed
Blo12g00884 Blo-Chr12:27039823 Blo16g01005 Blo-Chr16:38422035 9.93E-56 dispersed
Blo12g00884 Blo-Chr12:27039823 Blo14g00519 Blo-Chr14:7313111 1.03E-176 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1105 . Blo12g00884 . . . Bpe04g00247 Bma04g00247 . . . . Cma09g00105 . . . Cpe06g00068 . . . . . . . . . . . . . . . . Cone7ag1884 . . Lsi04g01742 Csa03g04277 Chy04g00420 . . . . . . . . . Sed13g1574 . Cmo09g00101 . . . Car09g00095 . . Bhi09g02092 Tan01g5013 Cmetu04g2766 . Hepe01g1686 Mch11g0120 . Cla05g01871 Cam05g2002 Cec05g2014 Cco05g2072 Clacu05g1994 Cmu05g1875 Cre05g1999 . . . Cme04g00472
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012601 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00884 Blo_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0