Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00885 ATGCAAGAGAGAGCTCTCTCTGCAACTGTACTACCACCGTTTTCTTCTTTTCTTTGCCTGCTTTTAATGGCTGTCGAAGCATTTTTACCACTCCCCGATCAACAATTAGAGCCCAAAAACCACCATTCCAAAAGAAGATGCAAGCTGCAAAAGCCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCATGGGACCAAATAAAGAACCTTCTCATCTGTAAACAGATCGAAGGAACCAAAGTTCATGACCCATCAAAGATCCCATCAGCCACGTCCAAAGTCGGGTCCACATGTAGCTCCATCTGTAGCTTCAAGGATGTCATTCATGGCAACACTAAGGTCGTACACAGAGCTGATAACTCGCCGGTGAGTAGCTCGGTGCGTCAGGAAGCCAGTTTGCTGAGTCGGAAAGGCGCAAATGGACAGTCGACTCGGTCTGTCTCGAGATCCATTAATGGCTCAACTCGAGGAATGCAATTGAGAAAGCTTTCTGGCTGTTACGAGTGTCATGCCATTGTCGACGTAAGGAGGTATCCTGTTGCGGGAACTACCCTTTGTTCTTGTTCTAAGTGTGGAGAGGTCTTCCCAAAGATGGAAAGCTTGGAACTTCACCAAGCAGTTCGCCATGCCGGTACCTTTGTTTCTCTAATCTCACTCCTGTTATTGAACTTTTTCCGACTTTCGTCCGATATGATAGTATCGGAGCTGGGGCAGGAAGATTCTGGTCGTAATATAGTGGAGATCATTTTCAAATCAAGCTGGCTGAAAAAGGATACTACCGTATTCCAAATCGAACGGATATTAAAGGTCCACAACACCCAGCGAACAATCCAGCGTTTCGAAGACTGCCGAGACGCAGTAAAGACACGCGCGCTCAACAGTAGCAGAAAAAACCCTAGGTGCGCTGCTGATGGAAACGAGCTACTGAGGTTCCATTGCACCAGTTTATCGTGCGCACTAGGCGCACATGGATCGTCCAGCTTGTGCGGCTCAGTTCCAGGCTGTGGAGTCTGCACTATCATTCGCCACGGCTTTCAAGGAAAAACGGAAGAGGGGGTGCGCACCACAGCTTGTAGCGGTAGGGCTCACGACCTGTTAAGCTGTACAGAAGGAAGGACTCAGAGGGCGATGCTGGTGTGTCGTGTCATCGCCGGGAGGGTGAGGCGCGTCGACGGAGATCCGGCGGAGAAGGAGGAGACCGTGCCTCCCCCTGGTCCTGGGTCGTATGATTCTGTATCTGGGCAAGCTGGCGTGTACTCCAATCTCGAGGAGTTGATCGTTTTTAATCCCAAGGCTATCCTTCCTTGTTTTGTAGTTATTTACACGGCCCTGGAGTTCCAGTGA 1341 49.44 MQERALSATVLPPFSSFLCLLLMAVEAFLPLPDQQLEPKNHHSKRRCKLQKPSSSSSSSSSSWDQIKNLLICKQIEGTKVHDPSKIPSATSKVGSTCSSICSFKDVIHGNTKVVHRADNSPVSSSVRQEASLLSRKGANGQSTRSVSRSINGSTRGMQLRKLSGCYECHAIVDVRRYPVAGTTLCSCSKCGEVFPKMESLELHQAVRHAGTFVSLISLLLLNFFRLSSDMIVSELGQEDSGRNIVEIIFKSSWLKKDTTVFQIERILKVHNTQRTIQRFEDCRDAVKTRALNSSRKNPRCAADGNELLRFHCTSLSCALGAHGSSSLCGSVPGCGVCTIIRHGFQGKTEEGVRTTACSGRAHDLLSCTEGRTQRAMLVCRVIAGRVRRVDGDPAEKEETVPPPGPGSYDSVSGQAGVYSNLEELIVFNPKAILPCFVVIYTALEFQ 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27044154 27046378 - BLOR04904 Blo12g00885 68146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00885 446 ProSiteProfiles Zinc finger C2H2 type domain profile. 185 210 IPR013087 -
Blo12g00885 446 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 232 444 - -
Blo12g00885 446 ProSitePatterns Zinc finger C2H2 type domain signature. 185 208 IPR013087 -
Blo12g00885 446 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 232 444 - -
Blo12g00885 446 MobiDBLite consensus disorder prediction 118 150 - -
Blo12g00885 446 MobiDBLite consensus disorder prediction 37 62 - -
Blo12g00885 446 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 46 209 - -
Blo12g00885 446 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 46 209 - -
Blo12g00885 446 SUPERFAMILY ADP-ribosylation 233 441 - -
Blo12g00885 446 MobiDBLite consensus disorder prediction 390 410 - -
Blo12g00885 446 Gene3D - 231 442 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00885 Blo-Chr12:27044154 Blo17g00187 Blo-Chr17:1909693 6.14E-83 dispersed
Blo12g00885 Blo-Chr12:27044154 Blo12g00683 Blo-Chr12:25082669 5.95E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13061 None None None None Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00885 - - zju:107435832 553.903