Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00889 ATGGGTGTTCCGGCTTTCTACAGGTGGCTAGCGGAGAAGTATCCGTTGGTGGTGGTGGATGTGATCGAGGAGGAACCTGTTGTCATCGATGCAGTTTCGATTCCCGTTGATACCAGTAAACCGAATCCAAACATAATTGAATACGATAACCTCTACCTCGATATGAATGGCATTATTCACCCTTGCTTTCATCCCGAAGACAGGCCGTCTCCGATTACTTATGATGAGGTTTTCCAATGCATGTTTGACTACATTGATAGACTCTTTGTGATGGTCCGGCCTCGAAAGCTGCTATACATGGCTATTGATGGTGTTGCTCCCAGGGCCAAAATGAATCAACAGAGGTCTCGACGTTTTAGAGCCGCAAAAGACGCAGCAGATTCGGCAGCTGAAGAGGAGCGCTTGAGGAAAGAGTTTGAAAGCGAGGGAAGAAAGCTTCCCCCAAAAGAGGAATCACAAACTTGTGATTCCAATGTTATAACTCCGGGAACTGAATTTATGTCTGTTTTATCTATTGCTTTACAATATTACATTCACCTCAGATTAAATAATGACCCTGGTTGGAAAAAAATTAAGGTTATCCTTTCTGATGCAAATGTTCCTGGTGAAGGGGAACACAAAATAATGTCATATATTCGTCTTCAAAGAAATCTTCCCGGTTTTGATCCAAATACGCACCATTGCTTGTATGGTTTGGATGCAGATCTAATTATGTTGGCGTTAGCTACCCATGAAGTTCATTTTTCTATCCTTCGTGAGATTGTATTCACCCCTGGGCAGCAAGACAAATGTTTTCTATGTGGTCAGATGGGACATTTAGCTGCAAATTGTGAAGGCAAGGCTAAGAGAAAAGCTGGAGAGCTTAATGAGAAAAGTGACACTGCTAATTTTGTGAAAAAACCTTATCAATTTCTCAACATATGGACCCTTAGGGAATATTTGGAATATGAGATGAGAATACCCAACCCTACATTTGAAATTGATCTTGAACGCATTGTTGATGATTTTATATTCATGTGTTTCTTTGTTGGCAATGACTTCTTACCTCACATGCCCACATTGGAGATCCGTGAGGGTGCCATCAACTTGCTTATTGCTGTGTACAAAAAGGAGTTTAGAGCGTTGGGTGGATATTTGACTGAGGGATGGAAGCCTATTTTGAGCAGAGTTGGCCGTTTCATTGAGGCTGTCGGATCTTATGAAGATCAAATATTTCACAAGAGAGCTCGATTGCATAAGCGACAAGCAGAAAGAACAAAGCGTGATAAGTCAAATGCACGAAGTTCTTATAAAAATGGACCGAGGGGGGATGATGTGGGACCTCAAATGCTACCTGACCTATTGGTTCCCGTTGGTCGTTTTCGTGGTTCACGGCTTGCTTCAGCTCCTTCTCCTTCACCATTTCAGTTATCAGGACGTGGTCCTTCATCCTCTGACAGAACAACATCTGAGGATGGTCGAAGTTTTGTTCACCCTAGGAAGGTTTCCAGATCATCACATGGGACTTCTGTTGCTGCCGCTATTGTTGAAGCAGAGAATTGCCTTGAAACAGATCTGGTTGAAAATAAAGAAGAACTGAAAGCAAAGCTTAAAGAAAGACTGCGCGAGAATTCTGATGTCTTTAACCACAAAACTTCAGAGGAAGATAAGGTCAAATTGGGGGAACCTGGGTGGAAAGAAAGATATTATGAAGAAAAATTTTCTGCTAAAACTCCTGAGGATCTTGATGCAATACGAAAAGATGTTGTTTTGAAATACACGGAAGGATTATGCTGGGTTATGCACTACTATTATGAAGGAGTCTGTTCTTGGCAGTGGTTTTATCCATATCACTATGCTCCCTTTGCCTCTGATCTTAAGGACCTTGGTGAACTCAATATATTTTTTGAGTTGGGATCTCCCTTTAAACCATTCAATCAACTTTTAGGGGTTTTCCCTGCAGCAAGTTCCCACGCGCTGCCTGTACAATATAGAAAGTTAATGACTGATCCAAACTCACCTATCATTGATTTTTATCCAACTGATTTTGAAGTGGATATGAATGGCAAACGGTATTCTTGGCAGGGTATTGCAAAATTACCTTTCATTGATGAAACTCGTCTTCTTTCAGAGGTTAAAAAAATTGAACATACATTGACGGAGGAGGAAGTGCGAAGAAATAGTGTGATGTTTGACATGCTTTTTGTGGCGACATCACATCCTCTATCTGTTTGTATATATTCGCTTGATCACCGCTACAAACAATTGAAACACAGTGAACGTGCTGAGTTTAAGGAAAAAATAGATGCTGAATTCAGTGAAGGAATGAATGGCTATTTGTCTCCATGTGGTGGGGATCCTTGCCCTCCTATATTCAGATCTCCTGTCGAAGGAATGGAAGATATTATAGACAACCAAGTCATATGTGCTATATATAAATTGCCTGATCCACACAGCCATATTTGTCGGCCACCAGTAGGAGTAAAATTTCCTCCAAAGGTTGTGACTTTGGGGGATATGAAACCTGCTCCTGCTTTATGGCATGAAGACAATGGAAATAGATGGCCACACAGCGGAAGGGAAAATCCCCCGGGATCTATTTCAGGTCCACAGCTTGGTGATGCTGCACGCCGACTCGTAGTAAACAGTTTACAGATAAAATCTGACCATAATGTGAGCGGAGAAATGCAAGTGCCTCCACAACCATATGGGGCTCCTCCTTTCTATCCATCACATCTTTCTTACCAGGATAACCAATTCCATGAGCGAGGACATAACAGACAGGCTCAATCCAGGCCATCCTACCCCCATAATCAATACCGTCCTTTTAATGACTCATCCAGGGGAAGTCATCACCCCCTTGAATATAATCATTTTCACTCATCAGCCCTCCATAATCCTCCAGACTACAGGGCTCGCTCTCAACAATCTGGAAGAGAAGGCCAAGTGAGTCAAGGCAACCTTGAATTTCCTGGGCATCCATACCACCAATCAGTGGGTTATCAGAGTAGTGAACCTTTGCATCGTCAAAGACCTAATCAAGGTGGAGGCCGAGGAGGCTACAATCATAGCCGACCACCAGTTGGCTTTAACCATCAGCAGTGGGGTGGTCAGGGGGCCCCACAGCAACACTACAGCTCTCCCAGAGGATATCATCACCAAATGGGCAACCAATTCTCTACTTTAGGCAGAGGAGCAAATAGGAGACCACCCCCTCCAAGCCAGGGGTCTGCTTCTTTATTGCCTAAGTTTGCAGTCAATTTTTCCCCTTTTCCCCTCCTTTATCTCGTGAGCCTGGTGGAGAGGAAGATAGACCTGGTTTATGGAGGAGGGAGCATAGGTCTAATGGGTTTAGTTTCTCAAGCCGTCTACGATGGAGGTCGTCATGTTATAGGAGTGATTCCGAGGACTCTCATGCCCATAGAGCTAACAGGAGAAACAATCGGAGAAGTGAGAGCAGTATCAGGGATGCACCAGAGGAAGGCCGAGATGGCCCGTCAAGCTGATGCCTTCATTGCATTGCCAGGTGGATATGGAACTTTAGAAGAACTCTTGGAAGTGATCACCTGGTCTCAACTGGGCATCCATGATAAACCTGTGGGGCTACTGAACGTTGATGGATACTACAACTCATTTCTGTCGTTCCTGGACAAAGCAGTCGAAGAAGGATTCATCACCCCAGCTGCCCGAAACATCACTGTCTCTGCCCAAACTGCCCATGAGCTCATCTCCAAGCTCGAGGATTATGTTCCCAGGCCTTCTGTGGCAGCCACCAAACTCCGGTGGGAGATGGAACAACATCTGGGTTACACAGCAAAATCAGATATTGCTCGTTAA 3816 43.95 MGVPAFYRWLAEKYPLVVVDVIEEEPVVIDAVSIPVDTSKPNPNIIEYDNLYLDMNGIIHPCFHPEDRPSPITYDEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADSAAEEERLRKEFESEGRKLPPKEESQTCDSNVITPGTEFMSVLSIALQYYIHLRLNNDPGWKKIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTHHCLYGLDADLIMLALATHEVHFSILREIVFTPGQQDKCFLCGQMGHLAANCEGKAKRKAGELNEKSDTANFVKKPYQFLNIWTLREYLEYEMRIPNPTFEIDLERIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLIAVYKKEFRALGGYLTEGWKPILSRVGRFIEAVGSYEDQIFHKRARLHKRQAERTKRDKSNARSSYKNGPRGDDVGPQMLPDLLVPVGRFRGSRLASAPSPSPFQLSGRGPSSSDRTTSEDGRSFVHPRKVSRSSHGTSVAAAIVEAENCLETDLVENKEELKAKLKERLRENSDVFNHKTSEEDKVKLGEPGWKERYYEEKFSAKTPEDLDAIRKDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLGELNIFFELGSPFKPFNQLLGVFPAASSHALPVQYRKLMTDPNSPIIDFYPTDFEVDMNGKRYSWQGIAKLPFIDETRLLSEVKKIEHTLTEEEVRRNSVMFDMLFVATSHPLSVCIYSLDHRYKQLKHSERAEFKEKIDAEFSEGMNGYLSPCGGDPCPPIFRSPVEGMEDIIDNQVICAIYKLPDPHSHICRPPVGVKFPPKVVTLGDMKPAPALWHEDNGNRWPHSGRENPPGSISGPQLGDAARRLVVNSLQIKSDHNVSGEMQVPPQPYGAPPFYPSHLSYQDNQFHERGHNRQAQSRPSYPHNQYRPFNDSSRGSHHPLEYNHFHSSALHNPPDYRARSQQSGREGQVSQGNLEFPGHPYHQSVGYQSSEPLHRQRPNQGGGRGGYNHSRPPVGFNHQQWGGQGAPQQHYSSPRGYHHQMGNQFSTLGRGANRRPPPPSQGSASLLPKFAVNFSPFPLLYLVSLVERKIDLVYGGGSIGLMGLVSQAVYDGGRHVIGVIPRTLMPIELTGETIGEVRAVSGMHQRKAEMARQADAFIALPGGYGTLEELLEVITWSQLGIHDKPVGLLNVDGYYNSFLSFLDKAVEEGFITPAARNITVSAQTAHELISKLEDYVPRPSVAATKLRWEMEQHLGYTAKSDIAR 1271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27058610 27070039 - BLOR04908 Blo12g00889 68150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00889 1271 CDD PIN_XRN1-2-like 51 314 - -
Blo12g00889 1271 MobiDBLite consensus disorder prediction 117 151 - -
Blo12g00889 1271 MobiDBLite consensus disorder prediction 462 483 - -
Blo12g00889 1271 PANTHER 5'-3' EXORIBONUCLEASE 1 1046 - -
Blo12g00889 1271 Coils Coil 122 142 - -
Blo12g00889 1271 MobiDBLite consensus disorder prediction 841 865 - -
Blo12g00889 1271 MobiDBLite consensus disorder prediction 411 443 - -
Blo12g00889 1271 MobiDBLite consensus disorder prediction 883 1071 - -
Blo12g00889 1271 MobiDBLite consensus disorder prediction 1020 1057 - -
Blo12g00889 1271 Pfam XRN 5'-3' exonuclease N-terminus 1 253 IPR004859 GO:0003676|GO:0004527
Blo12g00889 1271 MobiDBLite consensus disorder prediction 459 502 - -
Blo12g00889 1271 Pfam Xrn1 helical domain 327 833 IPR041412 -
Blo12g00889 1271 MobiDBLite consensus disorder prediction 922 939 - -
Blo12g00889 1271 Gene3D - 148 374 - -
Blo12g00889 1271 MobiDBLite consensus disorder prediction 961 977 - -
Blo12g00889 1271 Gene3D - 1055 1258 - -
Blo12g00889 1271 SUPERFAMILY Retrovirus zinc finger-like domains 259 284 IPR036875 GO:0003676|GO:0008270
Blo12g00889 1271 TIGRFAM TIGR00730: TIGR00730 family protein 1091 1242 IPR005269 GO:0009691|GO:0016787
Blo12g00889 1271 ProSiteProfiles Zinc finger CCHC-type profile. 263 277 IPR001878 GO:0003676|GO:0008270
Blo12g00889 1271 Gene3D - 625 722 - -
Blo12g00889 1271 Coils Coil 516 540 - -
Blo12g00889 1271 Gene3D - 1 134 - -
Blo12g00889 1271 Pfam Possible lysine decarboxylase 1109 1238 IPR031100 -
Blo12g00889 1271 PANTHER 5'->3' EXORIBONUCLEASE 1 1046 IPR027073 -
Blo12g00889 1271 SUPERFAMILY MCP/YpsA-like 1092 1242 - -
Blo12g00889 1271 SMART c2hcfinal6 263 279 IPR001878 GO:0003676|GO:0008270
Blo12g00889 1271 MobiDBLite consensus disorder prediction 113 156 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00889 - - K12619 vvi:100260845 1485.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00889 Blo-Chr12:27058610 Blo14g00184 Blo-Chr14:1465940 1.11E-90 dispersed
Blo10g00331 Blo-Chr10:4952689 Blo12g00889 Blo-Chr12:27058610 4.77E-115 transposed
Blo01g01592 Blo-Chr1:55798869 Blo12g00889 Blo-Chr12:27058610 4.80E-88 wgd
Blo12g00889 Blo-Chr12:27058610 Blo18g00781 Blo-Chr18:22474993 8.15E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1088 . Blo12g00889 . Bda03g00284 . Bpe04g00241 Bma04g00241 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone17ag1394 Cone20ag0439 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005436 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00889 Blo_Chr12 FPKM 4.541814 3.782929 10.726923 10.149591 10.626261 12.075137 12.01238 13.409213 13.295737 14.846002