Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00892 ATGGATTCTGTTCAAGAGAAGGTAAAGACTGGGGTTGTGGTTAATGCCCCACAGACAAATCTGCTCGAGGAGATGAAGCTATTGAAAGAGATACATGATCAGAGTGGTGCTCGAAAGGCCATAAATTCAGAGTTATGGCATGCCTGCGCTGGTCCTCTCGTTTCTTTGCCTCAGATGGGAAACCTCGTTTATTACTTCCCTCAAGGGCATAGCGAGCAGGTAGCAGTTTCAACTAAAAGAATCGCAACGACTCAGATTCCAAACTATCCAAATCTTTCATCCCAGCTGATGTGCCAAGTTCAAAATATAACTTTACATGCAGATAAAGATACAGATGAGATATATGCTCAAATGTGCCTCCAACCAGTGAACTCTGGAAAAGATGTTTTCCCAGTTCCGGATTTCAGACTGCGGCCAGGTGAACATCCAAGCGAGTTTTTCTGCAAAACTTTGACTGCCAGTGATACTAGCACCCATGGTGGCTTCTCGGTCCCTCGAAGGGCAGCCGAAAAACTTTTTCCTCCATTGGATTTCACGATGCAACCACCAACTCAAGAACTTGTTGTACGAGATTTGCATGACAATACGTGGACTTTTCGCCATATTTACCGAGGCCAGCCAAAGAGACACCTTCTGACAACCGGGTGGAGTTTGTTTGTAGGTGCAAAAAGGCTTAGAGCAGGCGACGCTGTTCTATTTATTAGGGATGAGAAATCGCAATTGCTAGTTGGAGTGAGGCGAGCCAATCGTCAGCAAACGACATTACCATCGTCTGTTCTGTCTGCTGATAGTATGCACATCGGTGTGCTAGCTGCTGCAGCTCATGCTGCTGCTAATCATAGCCCATTTACAATATTCTACAACCCAAGGGCATGCCCGTCGATGTTTGTGATTCCTATTGCTAAATATCGAAAATCTGTATATGGAACTCAACTTTCTGTCGGCATGAGGTTGGGAATGATGTTTGAAACAGAAGAATCAGGCAAGCGCAGATACATGGGTACATTGGTAGGTATTAGCGACTTAGATCCGTTGAGGTGGCCAGGTTCCAAGTGGCGAAATCTTCAGGTGGAATGGGATGAGCCTGGCTGTTGTGATAAACAAAATAGAGTGAGTTCATGGGAAATCGAAACTCCAGAAAGTCTCTTTATGTTTCCTTCTCTAACTTGGGGTTTGAAACGACCATTACACAATGGATTTTTGGGCGAAACCGATTGGGGACGTTTGGTTAAAAGACCTCTTCTTCGAGTCCCTGAAAATGGACATCAAAATTTTCCGTATGCAGTTTCGAGTTTATATTCTGAACACCTGATGAAGATGCTTGTCAGGCCTCAACTTGTGAATCTTCCTAGATCTTCTTCTCTGCCCCAAGAGTCAGTTTCCAAGGTCGACCAATTGTCGAATTTGAAGATCTTACAGCCTGTAAGTGATCAAAAGACTAACCTCATCTCTTTGGAAAACATATGCTTGCAAAATCAAACTTCTTGCCCTGATCAATCTGACGTACTAACTTCAATTTCATCATCAAACACTAATTTACCTGTAAAACTTGGATCTCCTCCGAGTCTCATACTTGCTGGAGCTAATGGTGAGTGCTCAAAAGTCAATTCTGAGCTCACAACAGATCAGTTAAGCCAGTTAGCCTTGACCGGGGAGTGTAGTGAAGAAAAACTAAGTTCTGGCCATGAAAATCTGCAGAGCTATGTAAACCATTTGCCATCTCCAAGCCAGGGTCTAACTCCATTGCCATTGCAGGCTAATGCTTGGCCTCTCCAGCCTCCGCTAGAACCATTGATGCACCATTCTCAACCAATTCACATGCCTCAATATGACTTTTCTGGTCCTACTTCCTTGCTTCCTTCTTTAGATCCCAATGGATGTGTACCTAACCCTTCCTACCAACCTCAATCTGTAGTCATCAGACCTTCAGTGCCTTCATCTATGGCAGGATTGCCAGACCAGTTTGGACCATTTTCAGACTCATTCAACTATCCTTTACCATTGGTGGGTCACGAATCTTGGGATAACCTAAGGTTCTTGTCCCATGCAAACCAAATGACTTTATTCTCCAATGAAGATCCATCTAGTTTGAATTGCGCGACTAATTCTAATGGTCTGCTGGATTTGTCTGATGAAAGCAACAATCAAAGTGGGATATATAGCTGTCCTAACATTGACATTAGTAATGGTGGAAGTACTGTTTTAGATCCATCTGTTTCAAGTGCAATTCTTGATGAATACTGCACATTAAAGGATCCCGAGTTTCAAAACCCCTCTGATTGTTTTGTCGGGAATTTCGGGTCTAGCCAGGATGTGCAGTCTCAGATTACTTGTGCCAGTCTCGGAGATTCACAGGCTCAGACTCGCCAAAATATATCTGATAACTCCGGCGGTACATCATCATGCAATCTGGATTTTGATGAGAACAGCCTTTTGCAGAACAGCTCATGGAAACAAGTAGTTCCACCCATGAGAACTTATACAAAGGTTCAGAAGGCAGGATCTGTGGGCAGATCAATTGACGTGACTAGTTTTAAGAACTACGATGAGCTGTGCTCGGCAATAGAGTGCATGTTTGGCCTAGAGGGGTTGTTGATCGACACAAGAGGGTCGGGATGGAAATTAGTATTCGTAGATTATGAAAATGACGTTCTTCTCGTTGGCGATGATCCCTGGGAAGAATTTGTAAGCTGTGTTAGGTGCATTAGAATTCTATCGCCTTCTGAAGTGCAACGGATGAGCCAAGACGGTACGAAGCTCCTAAACAGTGCTATGACGCAAGGGGTTAATTGCTCTGTATCAGAGAGTGGCCGATTCATGTCCAAATTCTAG 2832 43.93 MDSVQEKVKTGVVVNAPQTNLLEEMKLLKEIHDQSGARKAINSELWHACAGPLVSLPQMGNLVYYFPQGHSEQVAVSTKRIATTQIPNYPNLSSQLMCQVQNITLHADKDTDEIYAQMCLQPVNSGKDVFPVPDFRLRPGEHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDFTMQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGDAVLFIRDEKSQLLVGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANHSPFTIFYNPRACPSMFVIPIAKYRKSVYGTQLSVGMRLGMMFETEESGKRRYMGTLVGISDLDPLRWPGSKWRNLQVEWDEPGCCDKQNRVSSWEIETPESLFMFPSLTWGLKRPLHNGFLGETDWGRLVKRPLLRVPENGHQNFPYAVSSLYSEHLMKMLVRPQLVNLPRSSSLPQESVSKVDQLSNLKILQPVSDQKTNLISLENICLQNQTSCPDQSDVLTSISSSNTNLPVKLGSPPSLILAGANGECSKVNSELTTDQLSQLALTGECSEEKLSSGHENLQSYVNHLPSPSQGLTPLPLQANAWPLQPPLEPLMHHSQPIHMPQYDFSGPTSLLPSLDPNGCVPNPSYQPQSVVIRPSVPSSMAGLPDQFGPFSDSFNYPLPLVGHESWDNLRFLSHANQMTLFSNEDPSSLNCATNSNGLLDLSDESNNQSGIYSCPNIDISNGGSTVLDPSVSSAILDEYCTLKDPEFQNPSDCFVGNFGSSQDVQSQITCASLGDSQAQTRQNISDNSGGTSSCNLDFDENSLLQNSSWKQVVPPMRTYTKVQKAGSVGRSIDVTSFKNYDELCSAIECMFGLEGLLIDTRGSGWKLVFVDYENDVLLVGDDPWEEFVSCVRCIRILSPSEVQRMSQDGTKLLNSAMTQGVNCSVSESGRFMSKF 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27099990 27104683 + BLOR04911 Blo12g00892 68153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00892 943 Gene3D - 822 914 - -
Blo12g00892 943 Pfam B3 DNA binding domain 147 248 IPR003340 GO:0003677
Blo12g00892 943 Gene3D - 311 384 - -
Blo12g00892 943 ProSiteProfiles PB1 domain profile. 825 909 IPR000270 GO:0005515
Blo12g00892 943 PANTHER AUXIN RESPONSE FACTOR 5 28 929 - -
Blo12g00892 943 ProSiteProfiles B3 DNA-binding domain profile. 147 249 IPR003340 GO:0003677
Blo12g00892 943 SMART B3_2 147 249 IPR003340 GO:0003677
Blo12g00892 943 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 28 929 IPR044835 GO:0003677|GO:0006355|GO:0009725
Blo12g00892 943 SUPERFAMILY CAD & PB1 domains 817 904 - -
Blo12g00892 943 Gene3D - 145 248 IPR015300 -
Blo12g00892 943 CDD B3_DNA 146 247 IPR003340 GO:0003677
Blo12g00892 943 Pfam Auxin response factor 273 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Blo12g00892 943 Pfam AUX/IAA family 824 911 IPR033389 -
Blo12g00892 943 SUPERFAMILY DNA-binding pseudobarrel domain 134 276 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00438 Blo-Chr8:8805932 Blo12g00892 Blo-Chr12:27099990 1.47E-34 dispersed
Blo12g00892 Blo-Chr12:27099990 Blo16g00853 Blo-Chr16:35921520 3.66E-32 dispersed
Blo01g01589 Blo-Chr1:55737023 Blo12g00892 Blo-Chr12:27099990 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13062 PF02362 B3 4.00E-21 CL0405 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00892 K14486 - csv:101216825 1338.94