Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Blo12g00898	ATGGAAGTAGACGAGAGAGCTAGGCAAGCGAAGAAGATGGCGCAGGCCAGCTCCAGAAAAGGCTGCATGAGAGGAAAAGGAGGGCCAGAAAACGCTACCTGCACTTTCAAAGGCGTGAGGCAGCGAACTTGGGGCAAATGGGTGGCCGAAATTCGCGAGCCTAACCGCGGAGCTCGTCTATGGCTCGGCACCTTCGATACTTCTCACGAAGCGGCTATGGCCTACGACGCTGCCGCAAGAAAGCTCTACGGGCCCGACGCTAAGCTCAATCTTCCTGCAGAATTCAGTAGTTCCACCCAAATGGGAAACCAACCAGCCAAAAACGAATTGCAGCAGGTGGAGAAGGAGGCGCAGTTCTTCGGAGAGAATAATGAAGAAGATTTAAATAGAGGGATGCGGGGAAGCACGTGCAACTCGAACTTCGACGAGTCTATATGGAGGGAAGCAGCAAGGTCCTTAGACTTTCCAGTTATGGAAGAGCATGGATTCTTCTCTACCGCCTGGATAGACGAAGCAAGTGGGTGGGATACGTTTCAGTGGTGCTTGTAA	549	52.46	MEVDERARQAKKMAQASSRKGCMRGKGGPENATCTFKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSHEAAMAYDAAARKLYGPDAKLNLPAEFSSSTQMGNQPAKNELQQVEKEAQFFGENNEEDLNRGMRGSTCNSNFDESIWREAARSLDFPVMEEHGFFSTAWIDEASGWDTFQWCL	182

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
12	27174580	27175128	-	BLOR04917	Blo12g00898	68159

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Blo12g00898	182	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D	10	115	-	-
	Blo12g00898	182	Pfam	AP2 domain	35	84	IPR001471	GO:0003700\|GO:0006355
	Blo12g00898	182	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C	10	115	-	-
	Blo12g00898	182	PRINTS	Ethylene responsive element binding protein signature	58	74	IPR001471	GO:0003700\|GO:0006355
	Blo12g00898	182	PRINTS	Ethylene responsive element binding protein signature	36	47	IPR001471	GO:0003700\|GO:0006355
	Blo12g00898	182	CDD	AP2	34	93	IPR001471	GO:0003700\|GO:0006355
	Blo12g00898	182	Gene3D	AP2/ERF domain	35	93	IPR036955	GO:0003700\|GO:0006355
	Blo12g00898	182	SMART	rav1_2	35	98	IPR001471	GO:0003700\|GO:0006355
	Blo12g00898	182	MobiDBLite	consensus disorder prediction	1	34	-	-
	Blo12g00898	182	ProSiteProfiles	AP2/ERF domain profile.	35	92	IPR001471	GO:0003700\|GO:0006355
	Blo12g00898	182	SUPERFAMILY	DNA-binding domain	35	94	IPR016177	GO:0003677

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Blo12g00898	Blo17g00769	CCT

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Blo12g00898	Blo-Chr12:27174580	Blo17g00769	Blo-Chr17:24518640	3.41E-50	dispersed
	Blo12g00898	Blo-Chr12:27174580	Blo07g00353	Blo-Chr7:5630314	6.83E-23	transposed

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	13064	PF00847	AP2	1.20E-15	CL0081	Blo	TF

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Blo12g00898	-		-	peu:105128922	211.846