Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00899 ATGATGGGCCTGAATCAAGGCACTGCTCATGAATTCTACTCAACTGCCTCAGTAAGGATGTCTCAATCTCCTTCCAACTGTGTAGAAGCTATGGAGGGCAGATGCGAGATGGTGTTTATTCCAGAATTTGGAGATTCATTAGGTAAACGGAATATTCAGTGTGGGGGGTTATCGCTTAGCCTTGGCTCGAAGACACCCCTTTCTGCTGGAAATCAAAGTGCTATGGAAATGGAGTATTTTCCAAATTCTTCTAGCTTGGCCGCCGTGGGTAAAATGAACTCCAATGTCTATGATCATCTTGATGGTTCGGTTTTGGCTAGCACTGGCATGGACTCCAAATATGTCAAGGCGGCTCAACATTTGCTCGATGAAGTGGTTAATGTTAGAGCAGCTTTGAATGAGTTAATATCTAATAAACATAAAAGCTTTCTTAACAGCTCTAATGATAACAATGGCAGATCCAATGGTCGATCTTTGGATATGTCTTCTCATGAGCTCTTACCTGTAGAGCGACTGGACTTGAAGAACAAAAGTGCTAAGCTTTTGGCCATGGTTGAAGAGGTGGATGAAAAATATAGGCAATATTATCAACAAATGCAAGTTCTGGTGTCGTCTTTCAACACAATATCTGGTTGGGGGGCTGCAGAATTATATACAGCACTAGCCCATCAAACAATCTCCCGCCATTTTCGCCGCTTACGAGATGGAATTAGCGATCAGATTCAGGCGATGAGGGGAAGGTTAGGAGAGGAAGATTGTTCATCAGGTAGTCAAAGAGGATTTCCTCGCCTACGCTTTGTTGACCAGCAGCTCAGACAAGACAGGGTTCTTCGGCAACTTGGTCTTACCCGACATTCTTGGAGACCTCAAAGAGGGCTTCCTGAGAGCTCTGTCTCTATCCTTCGCGCTTGGCTGTTCGAACACTTCCTTCATCCATATCCAAAAGATTCTGAGAAGCTTATGTTAGCAAAGCAAACGGGATTGACGCGACATCAGGTTGCCAACTGGTTCATTAATGCACGTGTGCGCCTCTGGAAACCGATGGTGGAGGAGATGTACAAAGAAGAGTTTGGCGATCCGAAGATGGACTTCAACTTTTCACCGGAGAACACTTCCAGAGCTCCCGAGGACAGGGAAGAAGATTTGCAGGACGGCGCAATATCATCAAATGCCGACGGCGAGCTAATTCAGGACCCAAATTCAAACGAAAATGCGGATAACATTGCCAGTAATACTCTTTATCCGCGTAAAATTATTTTGTCGAGCCAAGTCTCGCTTGCATTGGAGCTGAGGCATTGCGAAAGTAACGCCTTCTCAAAACCGGAAGGTGTTCATAATTCTGGAGATTCTCCTATGGGTAACTGCAGAAAAGAACCGAGTAGTTTTTCAAGAATCTTTACCCGTGCGCTCCAGCAAGGTTCTGTTGCTGTCACTTCCGAAGATGTTTCCTTGGAGAATCAAGATATTGGTTCCGGTGAAGATTTAGGGGAGGGGGAAGATGTCCTTAGAGTCGTCAATGGTGCAGAGGCCGTTGAGTTTAATGAAAAGGCGGGAAGTTTGACAAATAAGTTGGAAAAGAAGGGAGAAGATGTGGACAGTTTCGATAATAGGTTCAAGCTGCGAAATGGAAAAGAGGTCTTTGAAGAGAAGGCCTACCTTGTGGGTGTTGAACGTAAAGGGGACATTGAGAATTCTTTTGGCATAGAGGAATCACTTAAGGAACTGGAACAACTAGCTGACACAGCTGGACTTGTGGTTGTTGGTTCCACATACCAGAAACTAGCTTCTCCAAACCCCAGGACTTACATAGGCTCTGGAAAAGCGGCAGAAATCAAGAGTGCAATTCGGGCACTGGATGTTGAAACTGTAATATTTGATGATGAGCTTTCAGCTGGGCAATTGCGAAATTTAGAAAAGACATTTGGTGGGGATGTTAGAGTCTGTGACCGTACTGCATTGATCCTGGATATCTTTAACCAGAGAGCAGCAACACACGAGGCAGCTTTGCAGGTTGCATTAGCACAAATGGAATACCAGTTGCCTCGATTAACAAAAATGTGGACTCATCTTGAACGTCAAGCAGGAGGTAGGGTGAAGGGTATGGGTGAGAAACAGATTGAAGTGGATAAACGTATCTTACGGACACAAATTGGAACTCTCAAAAAGGAGTTAGAATCGGTTAGAAAGCATCGACAACAATATCGAAACCGACGTGTTTCTGTACCTGTCCCAGTAATATCATTGGTGGGATATACAAATGCTGGGAAGAGTACTCTTCTCAATCATTTGACTGGAGCTAATGTCCTTGCCGAGGATCAACTGTTTGCCACCCTTGACCCAACTACAAGAAGGGTTCAAATGAAGAATGGAAAAGAGTTTCTCCTAACTGATACTGTTGGCTTCATCCAAAAATTACCTACTACTCTGATCGCTGCTTTTAGAGCAACATTAGAAGAAATATCAGAGTCATCACTTTTGGTGCATGTGGTAGACATCAGTCATCCACTGGCAGAGAAACAGATAGAAGCCGTTGAAAAAGTTCTTTCCGAATTAGATGTGTCATCAATTCCTAAGTTGGTGGTTTGGAACAAGATTGATAAAGTTAGTAATCCCGAACAAATGAGGTTGGAAGCGAAGAAGAGAGGAGATATTGTATGCATATCGGCTGTTAATAACATTGGTTTAGACGAATTTTGTGATGCAGTGCAGGAAAAACTAAAGGACTTGATGGTATGGGTGGAAGCTTTGATTCCATTTGACAAAGGGGAGCTTCTTAGCACTGTCCATCAAGTTGGAATGGTAGAGAGAACTGAATACACAGAAAATGGAACGTTGGTGAGGGCGCATGTTCCACTTAGGTGCTTCAGCCATATTGAGTTGCAAGAAGTATATGCAGTCACTTGCTTATTGGCCCAACCCGAATGTAGACTGCCGGATTCAGCAGAAAGAGCGCCTAAATACCCGCCCCGTCTTCCGGATTTGGTATCTCGTGCTTATACTCCCCCTGAGAAAAAGTTTGAAGGTAAAGGCGATGGAATTCAGCTGATGAACCCTAATTTCAACTCCGCATTAGACTCCAAGGTCTTTGGATTTCTATCTGTATATATATGCGTGGTATCTGATATGATACTTAGTGGATGCTCCGTACCCATTGGGTGTGCTTTTTTGAACTCCGAGACAAGCGGCTCTACTGCTTCAACATATCTACCTCGTCTGCATGCAAAGGCTGCTTTGTCTTGCATTAAAAATTCATGGAGATCTTATCCAGAAAGTAAAATTCAGTTTTGTAGAGGGCTCCCACCATTACACCTGTCGGCTGCATCTACCCCCCTTTTAAGTGGTGACCTTGGTAGCTTTATGCATGTTATCCCATTGTTACCCAGGCGAAGCAGGTCTCGCATGATCCCTCAAGCATCAAAGGATGTAGCCTATGGTTTCCGATTCCCTCCTATGACTAAGAAGCCTAGATGGTGGTGGAGGACATTAGCTTGCCTCCCCTACCTAATGCCTCTTCATGAAACATGGATGTATGCTCAAACTGCATATATGGTTCATCCGTTCTTGGAACAATTGGAATACGCAGCATACCCTTTTCTTCAAACAATTGGAAATTTACCAAGTTGGTCCCTGATGGCATATTTTTTTATTGCGTATCTAGGAGTTGTTAGGAGAAAGGAATGGCCTCACTTCTTCCGATTTCATGTGGTGATGGGCATGCTATTAGAGATTTCTCTGCAGGTGGTAGGTACTGCTAGCCGTTGGATGCCTGACGCATTGTACTGGGGCAAATTGGGGATGCACTTCTGGACAGCAGTAGGGTTTGGTTTCCTTTTTACAGTCTTGGAATGCATAAGATGTGCTCTAGCTGATCGCGGTGAAGTTCAGAAGGGAAGCGCTGAAATTTTTTTCCGTAAAGTGAAGTTTTGGAAGGAGGACGGAGAGGGAGACGCACCGCCTGTCTTTAATGTGGATGGCGTGAACTACTTTCATGTAAAGGTCGCTGGATTGTTATTTGTTGCTACAACAAGAGTGAATTTGTCCCCTTCTCTCGTTCTTGAACTTCTTCAAAGAATTGCACGAGTAATAAAGGATTACCTTGGAGTTCTAAATGAGGATTCACTGCGGAAAAATTTTGTTCTTGTGTATGAGTTACTGGATGAAGTTATAGATTTCGGTTATGTGCAAACAACATCAACCGAGGTTTTAAAGTCATTTGTTTTCAATGAGCCGATTGTGGTTGATTCTGGACGCTTGCCTGTCCTTGGCCCTGCTTCCATTTTTGTGCAAGGGACCAAAAGGATGCCAGGCACAGCTGTTACCAAATCTGTTATAGCAAATGAGCCTGGGGGTAAGAAGAGGGAGGAAATTTTTGTGGACGTTATTGAGAAAATAAGTGTGACGTTCAGCTCAAGTGGATATATCCTTACTTCTGAGATTGATGGCACCATTCAAATGAAGAGTTATCTTTCAGGGAACCCAGAAATACGCATTGCTCTGAACGAGGACCTAAGCATAGGAAGAAGTGGAAGATCTATTTATGATTATAACAGCTCATCTGGATCAGGGCCTGTTATTCTAGACGACTGTAATTTCCACGAATCAGTGCATCTTGATAATTTTGATGTTGACAGAACATTGTCCTTGGTACCCCCTGATGGCGAATTTCCTGTTATGAATTACAGAATGACTCAAGAATTCAAGCCTCCCTTTCGTATTAATGTACTGATTGAGGAAGCTGGACCCTTAAAGGCTGAAGTAATAATAAAAATACGAGCTGAATATGCCTCTACTGTGACCGCAAATACCGTACTGGTACAAATGCCACTGCCAACATTCACCAGCAGAGTTAGTTTTGAATTGGAACCTGGAGCCATCGTTGGTGGAGTAGAACATACCCTGCGTGCAAGGCTCACCTTCTCGCAAGAGTCCCATGGAAACATTGTGAAGGAAGCTGGACCTGTTAGCATGACATTCACAATCCCAATGTACAATGCTTCTAGACTTGTGGTAAAGTACTTGCAGATAGCACAGAAGTCTAGTAGCTACAATCCGTATAGATGGGTGAGATATGTAACCCAAGCGAATTCGTACGTTGCTCGGATATAA 5106 43.71 MMGLNQGTAHEFYSTASVRMSQSPSNCVEAMEGRCEMVFIPEFGDSLGKRNIQCGGLSLSLGSKTPLSAGNQSAMEMEYFPNSSSLAAVGKMNSNVYDHLDGSVLASTGMDSKYVKAAQHLLDEVVNVRAALNELISNKHKSFLNSSNDNNGRSNGRSLDMSSHELLPVERLDLKNKSAKLLAMVEEVDEKYRQYYQQMQVLVSSFNTISGWGAAELYTALAHQTISRHFRRLRDGISDQIQAMRGRLGEEDCSSGSQRGFPRLRFVDQQLRQDRVLRQLGLTRHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLMLAKQTGLTRHQVANWFINARVRLWKPMVEEMYKEEFGDPKMDFNFSPENTSRAPEDREEDLQDGAISSNADGELIQDPNSNENADNIASNTLYPRKIILSSQVSLALELRHCESNAFSKPEGVHNSGDSPMGNCRKEPSSFSRIFTRALQQGSVAVTSEDVSLENQDIGSGEDLGEGEDVLRVVNGAEAVEFNEKAGSLTNKLEKKGEDVDSFDNRFKLRNGKEVFEEKAYLVGVERKGDIENSFGIEESLKELEQLADTAGLVVVGSTYQKLASPNPRTYIGSGKAAEIKSAIRALDVETVIFDDELSAGQLRNLEKTFGGDVRVCDRTALILDIFNQRAATHEAALQVALAQMEYQLPRLTKMWTHLERQAGGRVKGMGEKQIEVDKRILRTQIGTLKKELESVRKHRQQYRNRRVSVPVPVISLVGYTNAGKSTLLNHLTGANVLAEDQLFATLDPTTRRVQMKNGKEFLLTDTVGFIQKLPTTLIAAFRATLEEISESSLLVHVVDISHPLAEKQIEAVEKVLSELDVSSIPKLVVWNKIDKVSNPEQMRLEAKKRGDIVCISAVNNIGLDEFCDAVQEKLKDLMVWVEALIPFDKGELLSTVHQVGMVERTEYTENGTLVRAHVPLRCFSHIELQEVYAVTCLLAQPECRLPDSAERAPKYPPRLPDLVSRAYTPPEKKFEGKGDGIQLMNPNFNSALDSKVFGFLSVYICVVSDMILSGCSVPIGCAFLNSETSGSTASTYLPRLHAKAALSCIKNSWRSYPESKIQFCRGLPPLHLSAASTPLLSGDLGSFMHVIPLLPRRSRSRMIPQASKDVAYGFRFPPMTKKPRWWWRTLACLPYLMPLHETWMYAQTAYMVHPFLEQLEYAAYPFLQTIGNLPSWSLMAYFFIAYLGVVRRKEWPHFFRFHVVMGMLLEISLQVVGTASRWMPDALYWGKLGMHFWTAVGFGFLFTVLECIRCALADRGEVQKGSAEIFFRKVKFWKEDGEGDAPPVFNVDGVNYFHVKVAGLLFVATTRVNLSPSLVLELLQRIARVIKDYLGVLNEDSLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSFVFNEPIVVDSGRLPVLGPASIFVQGTKRMPGTAVTKSVIANEPGGKKREEIFVDVIEKISVTFSSSGYILTSEIDGTIQMKSYLSGNPEIRIALNEDLSIGRSGRSIYDYNSSSGSGPVILDDCNFHESVHLDNFDVDRTLSLVPPDGEFPVMNYRMTQEFKPPFRINVLIEEAGPLKAEVIIKIRAEYASTVTANTVLVQMPLPTFTSRVSFELEPGAIVGGVEHTLRARLTFSQESHGNIVKEAGPVSMTFTIPMYNASRLVVKYLQIAQKSSSYNPYRWVRYVTQANSYVARI 1701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27179806 27198509 + BLOR04918 Blo12g00899 68160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00899 1701 CDD AP4_Mu_N 1291 1413 - -
Blo12g00899 1701 PRINTS Clathrin coat assembly protein signature 1595 1610 IPR001392 GO:0006886|GO:0016192|GO:0030131
Blo12g00899 1701 PRINTS Clathrin coat assembly protein signature 1371 1398 IPR001392 GO:0006886|GO:0016192|GO:0030131
Blo12g00899 1701 PRINTS Clathrin coat assembly protein signature 1526 1553 IPR001392 GO:0006886|GO:0016192|GO:0030131
Blo12g00899 1701 CDD HflX 703 906 IPR030394 GO:0005525
Blo12g00899 1701 Gene3D - 743 910 IPR027417 -
Blo12g00899 1701 ProSiteProfiles Mu homology domain (MHD) profile. 1453 1700 IPR028565 -
Blo12g00899 1701 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 1452 1700 IPR036168 -
Blo12g00899 1701 TIGRFAM GTP_HflX: GTP-binding protein HflX 551 906 IPR016496 GO:0005525
Blo12g00899 1701 Gene3D - 1285 1411 - -
Blo12g00899 1701 Pfam Chloroplast import apparatus Tic20-like 1129 1289 IPR005691 -
Blo12g00899 1701 SUPERFAMILY Homeodomain-like 288 354 IPR009057 -
Blo12g00899 1701 CDD homeodomain 287 348 IPR001356 GO:0003677
Blo12g00899 1701 Gene3D Mu homology domain, subdomain B 1568 1700 - -
Blo12g00899 1701 TIGRFAM small_GTP: small GTP-binding protein domain 745 902 IPR005225 GO:0005525
Blo12g00899 1701 Hamap GTPase HflX [hflX]. 572 935 IPR016496 GO:0005525
Blo12g00899 1701 SMART prehox3 103 239 IPR006563 -
Blo12g00899 1701 CDD AP-4_Mu4_Cterm 1448 1701 - -
Blo12g00899 1701 Pfam GTP-binding GTPase N-terminal 569 658 IPR025121 -
Blo12g00899 1701 Pfam 50S ribosome-binding GTPase 746 864 IPR006073 GO:0005525
Blo12g00899 1701 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 744 910 IPR030394 GO:0005525
Blo12g00899 1701 Coils Coil 717 737 - -
Blo12g00899 1701 Pfam Homeobox KN domain 304 343 IPR008422 GO:0003677|GO:0006355
Blo12g00899 1701 PANTHER AP COMPLEX SUBUNIT MU 1290 1701 - -
Blo12g00899 1701 Gene3D Mu homology domain, subdomain B 1452 1696 - -
Blo12g00899 1701 SMART HOX_1 287 351 IPR001356 GO:0003677
Blo12g00899 1701 MobiDBLite consensus disorder prediction 363 382 - -
Blo12g00899 1701 Pfam GTP-binding GTPase Middle Region 661 738 IPR032305 -
Blo12g00899 1701 Gene3D - 662 729 - -
Blo12g00899 1701 Pfam Associated with HOX 111 238 IPR006563 -
Blo12g00899 1701 Gene3D - 563 661 IPR042108 -
Blo12g00899 1701 Pfam Adaptor complexes medium subunit family 1451 1701 IPR028565 -
Blo12g00899 1701 ProSiteProfiles 'Homeobox' domain profile. 284 347 IPR001356 GO:0003677
Blo12g00899 1701 Gene3D - 283 360 - -
Blo12g00899 1701 PANTHER AP-4 COMPLEX SUBUNIT MU-LIKE 1290 1701 - -
Blo12g00899 1701 SUPERFAMILY SNARE-like 1293 1411 IPR011012 -
Blo12g00899 1701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 916 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo03g00129 Blo-Chr3:3751267 Blo12g00899 Blo-Chr12:27179806 6.68E-59 dispersed
Blo09g00467 Blo-Chr9:15843844 Blo12g00899 Blo-Chr12:27179806 8.71E-81 dispersed
Blo11g01057 Blo-Chr11:29036187 Blo12g00899 Blo-Chr12:27179806 5.28E-65 dispersed
Blo12g00539 Blo-Chr12:23334895 Blo12g00899 Blo-Chr12:27179806 4.96E-77 dispersed
Blo12g00899 Blo-Chr12:27179806 Blo06g00855 Blo-Chr6:31802531 2.40E-60 dispersed
Blo19g00327 Blo-Chr19:21528906 Blo12g00899 Blo-Chr12:27179806 8.18E-55 dispersed
Blo01g01577 Blo-Chr1:55576788 Blo12g00899 Blo-Chr12:27179806 0 transposed
Blo16g00330 Blo-Chr16:8881515 Blo12g00899 Blo-Chr12:27179806 1.84E-42 transposed
Blo01g01576 Blo-Chr1:55552504 Blo12g00899 Blo-Chr12:27179806 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13065 PF00928 Adap_comp_sub 3.90E-58 CL0448 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00899 K03665 - zju:107435477 779.63