Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00901 ATGGGGAGACTAGCTATGCTAAGAACTCCACCCTTCAGGTTGGATTTACAATCTGTTTTTTCATTTGCAATTGATTCCATTCATATAAGTTATTTTGTTGTTGTTTTGGCAGAGCAAAATCATATCAATCGCAAAACCAGTGACAGTGGCAGCCTTGGAAGAACTGTTGAAGAGATCTTTGCCGGAGATCATGGGGATAGCCGACTTAGGCTGTTCGTCCGGACCAAACACGTTAAACGTCGTGTCGGACCAAACACGTTAAACGTGTATGAAAAATACAGAGGTTATGGCCGTTCCTTGCCGGAGCTTAACGTGTTTCTCAACGACCTTTATAGTAACGACTTCAACAATGTTTTCGAATTGTTACCAATCTTCCTCCGTAAAATTAAGACAGAGAAAGGCAACGAGTTTGCCAGAAAATGCGCTATTTTCGGTGCTCCTGGTTCTTTTTATGGAAGACTATTTCCCAGCAAGAGCCTCCATTTTGTCCACTCCTCGTCCAGTATCCATTGGCTATCTCAGGTTCCGCCATGTTTGGATAAAGATGCCAAAGAAGCGATGAACAAGGGAGAGATTTACATATCAAAGAAGAGTCCACCATGCGTGCTGAAAGCTTACGCAGAGCAATTTCTTGAAGATTTCTCCGTGCTGCTAAAATCCCGATCAGAAGAAATGGTCGAGGGAGGAGGAATGGTGTTGACGTTTATGGGGAGGAAATCGACAGACCACAGAGACGAGAGCGGCCGCCATTGGGGGATCTTAGCGGAAGCCTTGATGAGTATGGTTTCAGAGGGATTAATTGAAGAAGAAAGGGTTGACTTTTTCAACCTTCCCTACTATGCTCCATGCAAAGAAGAACTGGAAATAGAGATACAGAGAGAGGGTTCATTCATTTTGAATCATTACGAAGCTTTTGAAGTTGATTGGGATGGAGGAGGAATCGATGAAACTCGATCGAGCGGCCGAAGAGTGGCAAATTGTATTCGGGCAGGAGTGGAGTCCATGCTTGAGTCTCATTTTGGAGGCGAAATCATGGATGTATTGGTCCTGACAATATCAAAACACAATCCTAAGATTGTTTTTATGGATGCAGAGATTGGTAAGGCGGAGGTAAAAAAGTATGTAGAAGACGAAGTAGAACATGGAGGGGATTTTGTGTCAAAGCAGAAAACTGCAACAGGCTGTGCAAGAGACGAGAAAGAGCTTTGGGTGGATCTTGTCGCTATCAGTTCCCGGGAATTGCTTGTTTCTGCTTCTTCAAATGTTGACTGTGCAAAGAGGAACCTCCACCACTGCCCCTCAGCTGAGAGGCAATCGCCATAA 1323 44.29 MGRLAMLRTPPFRLDLQSVFSFAIDSIHISYFVVVLAEQNHINRKTSDSGSLGRTVEEIFAGDHGDSRLRLFVRTKHVKRRVGPNTLNVYEKYRGYGRSLPELNVFLNDLYSNDFNNVFELLPIFLRKIKTEKGNEFARKCAIFGAPGSFYGRLFPSKSLHFVHSSSSIHWLSQVPPCLDKDAKEAMNKGEIYISKKSPPCVLKAYAEQFLEDFSVLLKSRSEEMVEGGGMVLTFMGRKSTDHRDESGRHWGILAEALMSMVSEGLIEEERVDFFNLPYYAPCKEELEIEIQREGSFILNHYEAFEVDWDGGGIDETRSSGRRVANCIRAGVESMLESHFGGEIMDVLVLTISKHNPKIVFMDAEIGKAEVKKYVEDEVEHGGDFVSKQKTATGCARDEKELWVDLVAISSRELLVSASSNVDCAKRNLHHCPSAERQSP 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27214861 27216650 + BLOR04920 Blo12g00901 68162

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00901 440 Pfam SAM dependent carboxyl methyltransferase 89 355 IPR005299 GO:0008168
Blo12g00901 440 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 82 355 IPR029063 -
Blo12g00901 440 Gene3D - 174 353 IPR042086 -
Blo12g00901 440 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 89 349 IPR005299 GO:0008168
Blo12g00901 440 PANTHER JASMONATE O-METHYLTRANSFERASE-LIKE 89 349 - -
Blo12g00901 440 Gene3D Vaccinia Virus protein VP39 82 308 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00901 K08241 E2.1.1.141; jasmonate O-methyltransferase [EC:2.1.1.141] - qsu:112011027 318.161
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00901 Blo-Chr12:27214861 Blo01g01575 Blo-Chr1:55503233 6.63E-119 dispersed
Blo12g00901 Blo-Chr12:27214861 Blo12g00902 Blo-Chr12:27226650 3.08E-161 tandem
Blo01g01574 Blo-Chr1:55486404 Blo12g00901 Blo-Chr12:27214861 4.08E-10 wgd
Blo12g00901 Blo-Chr12:27214861 Blo04g00516 Blo-Chr4:4404930 1.59E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g981 . Blo12g00901 . Bda03g00269 . . Bma04g00217 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00482 . . . . . . . . . . . . . . . . . . . . . . . . . Cla05g01919 Cam05g2056 Cec05g2068 Cco05g2120 Clacu05g2050 Cmu05g1927 Cre05g2050 . . . Cme04g00536
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218