Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00902 ATGGAAGTTGGGCGAATTCTTCATATGAATACAGGAAATGGGGAGACTAGCTATGCTAAGAACTCCAACCTTCAGAGCAAAATCATGTCAATCGCAAAACCAGTGACAGTGGCAGCCATGGAAGAGCTGTTGAGGAGATCTTCGCCAGAGATCATGGGGATAGCCGACTTAGGCTGTTCGTCCGGACCAAACACGTTAAACTTCGTGTCGGAGATGATGGACGTCGTGTATGAAAAATACAGAAGTTATGGTCGTTCCTTGCCGGAGCTTACCGTGTTTCTCAACGACCTTTATAGTAACGACTTCAACAATGTTTTTGAATCGTTACCAATGTTCCTCCATAAAGTTCAAACAGAGAAAGGCGACGAGTTTGCCAGAAAATGCGCCATTTTCGGTGCTCCTGGTTCTTTTTATGGAAGACTATTTCCCGGCAAGAGCCTCCATTTTGTCCACTCCTCGTCCAGTATCCATTGGCTATCTCAGGTCCCGCCATGTTTGGATAGAGATGCCAAAGAAGCAATGAACAAAGGAGCAATTTACATATCGAAGAAGAGTCCGCCACGCGTGCTGGAAGCTTACGCAGAGCAATTTCATGAAGATTTCTCCGTGCTGCTAAAATCTCGATCAGAAGAAATGGTCGAGGGAGGAGGAATGGTGTTGACGTTTATTGGGAGGGAATCGACAGAGCACAGAGACGAGAGCGCCTGCCATTGGGAGATCTTAGAGGAAGCCTTGATGAGTATGGTTTCAGAGGGATTAATTGAAGAAGAAAAGGTTGACTCTTTCAACCTTCCCTACTATGCTCCATGCAAAGAAGAAGTAGAAACAGAGATACAGAGAGAGGGTTCATTCATTTTGGATCGTTACGAAGTTCTTGAAATTGATGCGGATGGGGGAAGTAGCGATGAAAGTGGATCGAGAGGCCGATGGGAGGCAAATCATATGCGGGCTGTGCTGGAGTCCATGCTTGAGTCTCATTTTGGAGGCGAAATCATGGATGTATTGTTCCAAAGATACGAGAAAAAAGTCCAAGATCATTTGTCCAACACCAGTGACAAGGACATTTATTTCGTAATGTCTCTCGTAAGAAAATAA 1095 45.02 MEVGRILHMNTGNGETSYAKNSNLQSKIMSIAKPVTVAAMEELLRRSSPEIMGIADLGCSSGPNTLNFVSEMMDVVYEKYRSYGRSLPELTVFLNDLYSNDFNNVFESLPMFLHKVQTEKGDEFARKCAIFGAPGSFYGRLFPGKSLHFVHSSSSIHWLSQVPPCLDRDAKEAMNKGAIYISKKSPPRVLEAYAEQFHEDFSVLLKSRSEEMVEGGGMVLTFIGRESTEHRDESACHWEILEEALMSMVSEGLIEEEKVDSFNLPYYAPCKEEVETEIQREGSFILDRYEVLEIDADGGSSDESGSRGRWEANHMRAVLESMLESHFGGEIMDVLFQRYEKKVQDHLSNTSDKDIYFVMSLVRK 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27226650 27227908 + BLOR04921 Blo12g00902 68163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00902 364 Pfam SAM dependent carboxyl methyltransferase 40 363 IPR005299 GO:0008168
Blo12g00902 364 Gene3D Vaccinia Virus protein VP39 21 295 IPR029063 -
Blo12g00902 364 PANTHER OS01G0701700 PROTEIN 2 361 - -
Blo12g00902 364 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 364 IPR029063 -
Blo12g00902 364 Gene3D - 6 350 IPR042086 -
Blo12g00902 364 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 2 361 IPR005299 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00902 K08241 E2.1.1.141; jasmonate O-methyltransferase [EC:2.1.1.141] - vvi:100266134 414.075
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01575 Blo12g00902 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01575 Blo-Chr1:55503233 Blo12g00902 Blo-Chr12:27226650 1.31E-177 dispersed
Blo03g00540 Blo-Chr3:20965778 Blo12g00902 Blo-Chr12:27226650 5.11E-62 dispersed
Blo04g00517 Blo-Chr4:4417992 Blo12g00902 Blo-Chr12:27226650 1.08E-92 dispersed
Blo04g00907 Blo-Chr4:10646388 Blo12g00902 Blo-Chr12:27226650 9.05E-92 dispersed
Blo05g00806 Blo-Chr5:29457276 Blo12g00902 Blo-Chr12:27226650 5.07E-46 dispersed
Blo05g00807 Blo-Chr5:29566164 Blo12g00902 Blo-Chr12:27226650 2.13E-99 dispersed
Blo12g00901 Blo-Chr12:27214861 Blo12g00902 Blo-Chr12:27226650 3.08E-161 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g980 Blo01g01575 Blo12g00902 . . . . . . . . Cma01g01923 . . . . . . . . . . . . . . . . . . . . . . . . Lsi04g01693 Csa03g04233 . . . . . . . . . . . Cmo01g01986 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000124 5 1 6 7 2 6 0 6 4 6 7 6 5 9 9 7 6 2 4 7 8 15 10 11 14 4 9 21 9 12 218