Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00903 ATGGATTCTTTCTGTGCAACTGTGAAAGGCAATGTCCATTCAGCTCGAGTAAATAAGGCTGGTTCGAGGATTCGAGGTTCAGGATTTTGGGGTGAGAATATCAGAGGAAGCCTAAAGAGCAGGGATTTCAGTATTCGATCATGGAGGAATCCAAATACTGAAATCCGGATTAGAAACCTTAAGCCTGGGTTTCCCTTCGCCGTTCTTACGTCTGATATCAATAACGACACTTTGATTTACCAGGATCCTCTGTTTGAGACACCAAAAGCTGACCCAAAAAATGTAGCTTCGATTATATTGGGCGGAGGAGCTGGAACTCGGCTGTTTCCTCTTACCAGCAGAAGGGCCAAGCCAGCAGTACCAATTGGTGGATGCTACAGGCTGATTGACGTGCCAATGAGTAATTGCATCAACAGTGGCATAAAAAAGATATTCATTTTAACGCAGTTTAACTCTTTTTCTCTCAATCGTCACCTTGCTCGCACGTATAATTTTGGAAATGGCGTGAATTTCGGAGATGGATTCGTTGAGGTATTGGCTGCCACTCAGACATCTGGAGAATCTGGAAAGAAGTGGTTCCAGGGGACTGCTGATGCTGTAAGACAATTTATATGGGTTTTCGAGGATGCTAAGAATAAAAATATTGAGCATATATTGATTCTATCTGGAGATCATCTCTACAGGATGGATTACATGGAGTTTGTGCAGAAACATATCGACTCAAATGCTGATATCACAGTTTCATGTGTTCCAATGGATGATAGCCGTGCATCTGACTATGGACTAATGAAAATCGACAACACAGGGCGAGTAATACAATTTGCCGAGAAACCAAAGGGACCCGACTTGAAATCCATGTCAGTGGACACAACTCTTTTGGGGCTATCAGAGCAAGATGCTCGAAAATATGCTTATATTGCGTCCATGGGAGTCTACGTGTTTAGGACTGATGTTCTTCTTAAGCTTTTAAGGTGGAGTTATCCTTCATCCAATGACTTCGGCTCCGAAATCATTCCATCAGCTGTGAGAGAGCACAGCGTTCAAGCGTATTTGTTCAATGATTACTGGGAGGATATTGGAACCATTAAGTCATTTTTTGATGCAAACCTTGCTCTTACGGAACAGCCCCCGAAGTTTCAATTCTACGACCCGAAGACTCCTTTCTACACATCTCCTAGATTCTTGCCGCCTACCAAAGTTGAACAGTGCAGGATCGTAGACGCAATAATATCGCATGGTTGCTTTTTACGGGAATGTAGTGTTGAACACTCTATCGTTGGTGTGCGCTCTCGTTTGGAGTATGGCGTGGAGCTCAAGGATACTATGATGATGGGTGCCGACTTCTACCAAACGGAATCAGAGATTGCTTCTGCTCTGGCCGAAGGGAAGGTTCCCATCGGTGTCGGAGAGAATACCAAAATCAGGAATTGCATAATAGACAAGAACGCCAAGATCGGAAGAAATGTTATCATTGCAAACACTGATGGCGTCGAAGAAGCTGAGCGACCAAACGAGGGATTTTACATCAGATCTCGCTCCCAAGGTGCAAAGACATACTTGGAAAGAAGATTTGAGAGCTTCAGTGGCTCTTCAAGGGACGAGTTGATCAAAGATGCACTTATTGCTACTCGTGTAACCTTGGAGGGAGGGAAGCTGAACAGTTCTGTTTGCACGATAGCTGTGATTGGAGTTGGGAAGCCTTTCCATATATTGGACCAACAAACTGTGCAGCAGTTGATTGATGCATTTGAGATAGTGGAAGAGGATGAGGAAGAGGCTCCAGCAGCCGAACCTGGAGGTACTGATGAGCAAGGAGGTGAAGAACAGGGTGCCGGCACTGACCCCGGCTCTGATCAGGGCGTGGCTCTTATGGATATATGA 1881 44.82 MDSFCATVKGNVHSARVNKAGSRIRGSGFWGENIRGSLKSRDFSIRSWRNPNTEIRIRNLKPGFPFAVLTSDINNDTLIYQDPLFETPKADPKNVASIILGGGAGTRLFPLTSRRAKPAVPIGGCYRLIDVPMSNCINSGIKKIFILTQFNSFSLNRHLARTYNFGNGVNFGDGFVEVLAATQTSGESGKKWFQGTADAVRQFIWVFEDAKNKNIEHILILSGDHLYRMDYMEFVQKHIDSNADITVSCVPMDDSRASDYGLMKIDNTGRVIQFAEKPKGPDLKSMSVDTTLLGLSEQDARKYAYIASMGVYVFRTDVLLKLLRWSYPSSNDFGSEIIPSAVREHSVQAYLFNDYWEDIGTIKSFFDANLALTEQPPKFQFYDPKTPFYTSPRFLPPTKVEQCRIVDAIISHGCFLRECSVEHSIVGVRSRLEYGVELKDTMMMGADFYQTESEIASALAEGKVPIGVGENTKIRNCIIDKNAKIGRNVIIANTDGVEEAERPNEGFYIRSRSQGAKTYLERRFESFSGSSRDELIKDALIATRVTLEGGKLNSSVCTIAVIGVGKPFHILDQQTVQQLIDAFEIVEEDEEEAPAAEPGGTDEQGGEEQGAGTDPGSDQGVALMDI 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27229479 27234763 + BLOR04922 Blo12g00903 68164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00903 626 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 307 317 IPR005836 GO:0005978|GO:0008878
Blo12g00903 626 CDD LbH_G1P_AT_C 396 501 - -
Blo12g00903 626 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 1 511 IPR011831 GO:0005978|GO:0008878
Blo12g00903 626 Pfam Nucleotidyl transferase 97 374 IPR005835 GO:0009058|GO:0016779
Blo12g00903 626 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE LARGE SUBUNIT 3, CHLOROPLASTIC 1 511 - -
Blo12g00903 626 SUPERFAMILY Nucleotide-diphospho-sugar transferases 94 489 IPR029044 -
Blo12g00903 626 TIGRFAM glgC: glucose-1-phosphate adenylyltransferase 96 492 IPR011831 GO:0005978|GO:0008878
Blo12g00903 626 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 192 200 IPR005836 GO:0005978|GO:0008878
Blo12g00903 626 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 511 591 IPR029055 -
Blo12g00903 626 CDD ADP_Glucose_PP 98 359 - -
Blo12g00903 626 SUPERFAMILY Trimeric LpxA-like enzymes 390 509 IPR011004 -
Blo12g00903 626 MobiDBLite consensus disorder prediction 587 626 - -
Blo12g00903 626 Gene3D Hexapeptide repeat proteins 394 515 - -
Blo12g00903 626 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 101 120 IPR005836 GO:0005978|GO:0008878
Blo12g00903 626 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 84 393 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00903 K00975 glgC; glucose-1-phosphate adenylyltransferase [EC:2.7.7.27] - zju:107420179 873.618
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01569 Blo12g00903 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00706 Blo-Chr2:21852970 Blo12g00903 Blo-Chr12:27229479 0 dispersed
Blo04g00618 Blo-Chr4:5390090 Blo12g00903 Blo-Chr12:27229479 1.51E-174 dispersed
Blo01g01573 Blo-Chr1:55460637 Blo12g00903 Blo-Chr12:27229479 0 transposed
Blo02g00807 Blo-Chr2:28108614 Blo12g00903 Blo-Chr12:27229479 0 transposed
Blo04g01356 Blo-Chr4:31154520 Blo12g00903 Blo-Chr12:27229479 9.42E-97 transposed
Blo01g01569 Blo-Chr1:55443762 Blo12g00903 Blo-Chr12:27229479 6.42E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g968 Blo01g01569 Blo12g00903 Bda01g00523 Bda03g00266 Bpe02g00383 Bpe04g00220 Bma04g00214 Bma01g02327 Cmo05g00263 Cmo12g00405 . . . Car12g00430 . . Cpe07g00407 Bhi04g00191 . . . Hepe10g0622 . . Cla08g01470 Cam08g1958 Cec08g1533 Cco08g1671 Clacu08g1648 . Cre08g1433 Cone4ag1921 Cone7ag1833 . . . . . Cme03g01936 . . . . . . . . . . . Cma12g00455 Cma05g00258 Car05g00215 . Cpe11g00213 . . . . . . . . . . . . . . . Lsi08g01380 Csa02g02071 Chy03g01441 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001022 2 5 3 5 3 2 3 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 7 2 3 83