Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00905 ATGCCACTGAAAAGTGTAGTTCGTGAAATTAGAGATGGCATTGGAAACTTGAGAAGAAGAGGGGAAGAAGGAAGGCCTTTACGTCATCCGGGAAAATCTCATGTTGCACCAGAACAGCCGCCATGTTCACCTTCTTCAAATGCAGATAGCCGATGGGCGAGTCTGCCCATCGAATTGTTTCTAGATATAATTCAAAGAGTAGAATCAAGCGAGACCTCCTGGCCTGGCAGGAGAGATGTTGTTGCCTGTGCTTCTGTTTGTAAATCATGGAGGGAGATTGCTAAAGGAGTTGTCAAAACCCCAGAGCAGTCTGGGTTGCTCACCTTTCCCATCTCCCTCAAGCAGCCGGGACCAAGGGAGACTCCAATCCAGTGCTTTATAAAGAGGGAGAGTTCAACATCAACCTATCTACTCTATCTTGGTCTAAGTCCTGCCCTGTCTGGCAACATGAGCAAGTTGTTACTAGCTGGAAGGAAGGTCAGACGGGCAACCCATACCGAATTTGTGATATCCTTAGTCTCCAATGATTTTTCTCGAGCAAGCAATACTTACATTGGAAAGTTAAGATCCAATTTCATGGGAACAAAGTTTTCAATCTATGACAGTCAGCCACCACAGGATCCGATTCTGCAACGAGCTTGTAGGCCACATCGAAGAATCCATTTAAAGCAGGTTTCTCCAAGAGTACCCATTGGAAACTATTTAAGTTGCTCCATACATTATGAGCTTAATGTCCTACGAACCCGAGGTCCAAGGAGAATGCAGTGCACAATGAACTCAATACCATTTTTGTCCCTTCTAGAAGGGGGCACGGCCCCTACTCCAACCGAATTCACAAACTGTATCAATGAAAAACAAGATCTTCCATTGTCACTACCAAAGAGAAAGAAGCATCAAGTTGAGTTAAGTTCCGCTAGTCTATCTGAGCCTTTCCTCCCGATTCATTCTCCACTCGTTCTGAAGAATAAAGCTCCGAGATGGCATGAACAGCTGCAATGTTGGTGCCTGAACTTCAGAGGGCGTGTAACAGTCGCCTCTGTCAAGAATTTCCAGCTCGTGGCATCAGCTGATCTTCACCATAATATCTCCGAGACTGAACAAGAGAGAGTGATTCTGCAATTTGGTAAAATTGGAAAAGATATATTCACCATGGATTACCGATATCCGCTGTCTGCATTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACTAAACCCGCCTGCGAATGA 1233 45.26 MPLKSVVREIRDGIGNLRRRGEEGRPLRHPGKSHVAPEQPPCSPSSNADSRWASLPIELFLDIIQRVESSETSWPGRRDVVACASVCKSWREIAKGVVKTPEQSGLLTFPISLKQPGPRETPIQCFIKRESSTSTYLLYLGLSPALSGNMSKLLLAGRKVRRATHTEFVISLVSNDFSRASNTYIGKLRSNFMGTKFSIYDSQPPQDPILQRACRPHRRIHLKQVSPRVPIGNYLSCSIHYELNVLRTRGPRRMQCTMNSIPFLSLLEGGTAPTPTEFTNCINEKQDLPLSLPKRKKHQVELSSASLSEPFLPIHSPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVASADLHHNISETEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27242887 27244447 + BLOR04924 Blo12g00905 68166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00905 410 Gene3D Tubby Protein; Chain A 109 410 IPR025659 -
Blo12g00905 410 MobiDBLite consensus disorder prediction 17 32 - -
Blo12g00905 410 ProSitePatterns Tub family signature 1. 338 351 IPR018066 -
Blo12g00905 410 PANTHER TUBBY-RELATED 1 410 - -
Blo12g00905 410 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 410 - -
Blo12g00905 410 MobiDBLite consensus disorder prediction 17 49 - -
Blo12g00905 410 SUPERFAMILY Tubby C-terminal domain-like 101 410 IPR025659 -
Blo12g00905 410 ProSitePatterns Tub family signature 2. 395 410 IPR018066 -
Blo12g00905 410 Pfam Tub family 113 405 IPR000007 -
Blo12g00905 410 PRINTS Tubby superfamily signature 367 386 IPR000007 -
Blo12g00905 410 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Blo12g00905 410 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Blo12g00905 410 PRINTS Tubby superfamily signature 388 410 IPR000007 -
Blo12g00905 410 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Blo12g00905 410 PRINTS Tubby superfamily signature 320 337 IPR000007 -
Blo12g00905 410 PRINTS Tubby superfamily signature 338 354 IPR000007 -
Blo12g00905 410 Pfam F-box domain 52 98 IPR001810 GO:0005515
Blo12g00905 410 Gene3D - 46 97 - -
Blo12g00905 410 SUPERFAMILY F-box domain 51 95 IPR036047 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g01567 Blo12g00905 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00905 Blo-Chr12:27242887 Blo16g00048 Blo-Chr16:1891899 0 dispersed
Blo01g01567 Blo-Chr1:55426131 Blo12g00905 Blo-Chr12:27242887 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13066 PF01167 Tub 1.30E-102 CL0395 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00905 K19600 - zju:107420271 612.453