Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00905 ATGCCACTGAAAAGTGTAGTTCGTGAAATTAGAGATGGCATTGGAAACTTGAGAAGAAGAGGGGAAGAAGGAAGGCCTTTACGTCATCCGGGAAAATCTCATGTTGCACCAGAACAGCCGCCATGTTCACCTTCTTCAAATGCAGATAGCCGATGGGCGAGTCTGCCCATCGAATTGTTTCTAGATATAATTCAAAGAGTAGAATCAAGCGAGACCTCCTGGCCTGGCAGGAGAGATGTTGTTGCCTGTGCTTCTGTTTGTAAATCATGGAGGGAGATTGCTAAAGGAGTTGTCAAAACCCCAGAGCAGTCTGGGTTGCTCACCTTTCCCATCTCCCTCAAGCAGCCGGGACCAAGGGAGACTCCAATCCAGTGCTTTATAAAGAGGGAGAGTTCAACATCAACCTATCTACTCTATCTTGGTCTAAGTCCTGCCCTGTCTGGCAACATGAGCAAGTTGTTACTAGCTGGAAGGAAGGTCAGACGGGCAACCCATACCGAATTTGTGATATCCTTAGTCTCCAATGATTTTTCTCGAGCAAGCAATACTTACATTGGAAAGTTAAGATCCAATTTCATGGGAACAAAGTTTTCAATCTATGACAGTCAGCCACCACAGGATCCGATTCTGCAACGAGCTTGTAGGCCACATCGAAGAATCCATTTAAAGCAGGTTTCTCCAAGAGTACCCATTGGAAACTATTTAAGTTGCTCCATACATTATGAGCTTAATGTCCTACGAACCCGAGGTCCAAGGAGAATGCAGTGCACAATGAACTCAATACCATTTTTGTCCCTTCTAGAAGGGGGCACGGCCCCTACTCCAACCGAATTCACAAACTGTATCAATGAAAAACAAGATCTTCCATTGTCACTACCAAAGAGAAAGAAGCATCAAGTTGAGTTAAGTTCCGCTAGTCTATCTGAGCCTTTCCTCCCGATTCATTCTCCACTCGTTCTGAAGAATAAAGCTCCGAGATGGCATGAACAGCTGCAATGTTGGTGCCTGAACTTCAGAGGGCGTGTAACAGTCGCCTCTGTCAAGAATTTCCAGCTCGTGGCATCAGCTGATCTTCACCATAATATCTCCGAGACTGAACAAGAGAGAGTGATTCTGCAATTTGGTAAAATTGGAAAAGATATATTCACCATGGATTACCGATATCCGCTGTCTGCATTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACTAAACCCGCCTGCGAATGA 1233 45.26 MPLKSVVREIRDGIGNLRRRGEEGRPLRHPGKSHVAPEQPPCSPSSNADSRWASLPIELFLDIIQRVESSETSWPGRRDVVACASVCKSWREIAKGVVKTPEQSGLLTFPISLKQPGPRETPIQCFIKRESSTSTYLLYLGLSPALSGNMSKLLLAGRKVRRATHTEFVISLVSNDFSRASNTYIGKLRSNFMGTKFSIYDSQPPQDPILQRACRPHRRIHLKQVSPRVPIGNYLSCSIHYELNVLRTRGPRRMQCTMNSIPFLSLLEGGTAPTPTEFTNCINEKQDLPLSLPKRKKHQVELSSASLSEPFLPIHSPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVASADLHHNISETEQERVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27242887 27244447 + BLOR04924 Blo12g00905 68166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00905 410 Gene3D Tubby Protein; Chain A 109 410 IPR025659 -
Blo12g00905 410 MobiDBLite consensus disorder prediction 17 32 - -
Blo12g00905 410 ProSitePatterns Tub family signature 1. 338 351 IPR018066 -
Blo12g00905 410 PANTHER TUBBY-RELATED 1 410 - -
Blo12g00905 410 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 410 - -
Blo12g00905 410 MobiDBLite consensus disorder prediction 17 49 - -
Blo12g00905 410 SUPERFAMILY Tubby C-terminal domain-like 101 410 IPR025659 -
Blo12g00905 410 ProSitePatterns Tub family signature 2. 395 410 IPR018066 -
Blo12g00905 410 Pfam Tub family 113 405 IPR000007 -
Blo12g00905 410 PRINTS Tubby superfamily signature 367 386 IPR000007 -
Blo12g00905 410 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Blo12g00905 410 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Blo12g00905 410 PRINTS Tubby superfamily signature 388 410 IPR000007 -
Blo12g00905 410 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Blo12g00905 410 PRINTS Tubby superfamily signature 320 337 IPR000007 -
Blo12g00905 410 PRINTS Tubby superfamily signature 338 354 IPR000007 -
Blo12g00905 410 Pfam F-box domain 52 98 IPR001810 GO:0005515
Blo12g00905 410 Gene3D - 46 97 - -
Blo12g00905 410 SUPERFAMILY F-box domain 51 95 IPR036047 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00905 K19600 TUB, TULP; tubby and related proteins - zju:107420271 612.453
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01567 Blo12g00905 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00905 Blo-Chr12:27242887 Blo16g00048 Blo-Chr16:1891899 0 dispersed
Blo01g01567 Blo-Chr1:55426131 Blo12g00905 Blo-Chr12:27242887 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g960 Blo01g01567 Blo12g00905 Bda01g00525 Bda03g00263 Bpe02g00385 Bpe04g00217 Bma04g00212 . . . Cma01g01916 Cma09g00148 Car01g01497 . . Cpe06g00104 . . . . . . . . . . . . . . . Cone4ag1918 Cone7ag1830 . . Lsi04g01686 Csa03g04225 Chy04g00489 . . . . . . . . . . Cmo01g01979 Cmo09g00146 . . . Car09g00133 . Cpe02g00120 . . . . . . . Cla05g01926 Cam05g2064 Cec05g2076 Cco05g2127 Clacu05g2058 Cmu05g1935 Cre05g2058 . . . Cme04g00548
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo15g00775 . 1 445 TUB Transcription Factor Family AT1G76900 67.4 4.2e-167 584.7
Blo02g00865 . 1 422 TUB Transcription Factor Family AT1G76900 69.5 4.2e-167 584.7
Blo01g01728 BCT 1 424 TUB Transcription Factor Family AT1G76900 68.6 4.2e-167 584.7
Blo12g00786 BCT 1 427 TUB Transcription Factor Family AT1G76900 68.1 4.7e-166 581.3
Blo13g00300 . 12 437 TUB Transcription Factor Family AT1G76900 66.6 2.9e-160 562.0
Blo12g00905 BCT 1 410 TUB Transcription Factor Family AT1G76900 50.5 8.4e-115 411.0
Blo02g00865 . 169 422 TUB Transcription Factor Family AT1G25280 73.8 1.2e-100 363.2
Blo15g00775 . 192 445 TUB Transcription Factor Family AT1G25280 73.0 2.9e-99 358.6
Blo12g00786 BCT 173 427 TUB Transcription Factor Family AT1G25280 66.1 3.7e-94 341.7
Blo01g01728 BCT 173 424 TUB Transcription Factor Family AT1G25280 67.7 6.9e-93 337.4
Blo13g00300 . 187 437 TUB Transcription Factor Family AT1G25280 67.8 9.3e-90 327.0
Blo01g01567 BCT 176 412 TUB Transcription Factor Family AT1G25280 53.6 2.4e-69 259.2
Blo01g00087 . 156 384 TUB Transcription Factor Family AT1G25280 53.2 1.2e-68 256.9
Blo16g00048 . 189 440 TUB Transcription Factor Family AT1G25280 51.2 9.4e-66 247.3
Blo12g00905 BCT 174 410 TUB Transcription Factor Family AT1G25280 52.6 1.2e-65 246.9
Blo01g00087 . 98 384 TUB Transcription Factor Family AT5G18680 61.3 1.8e-94 342.8
Blo02g00865 . 112 422 TUB Transcription Factor Family AT5G18680 54.0 2.1e-82 302.8
Blo01g01728 BCT 112 424 TUB Transcription Factor Family AT5G18680 51.7 6.1e-82 301.2
Blo13g00300 . 123 437 TUB Transcription Factor Family AT5G18680 50.3 5.7e-80 294.7
Blo01g01567 BCT 113 412 TUB Transcription Factor Family AT5G18680 50.3 2.0e-77 286.2
Blo16g00048 . 1 440 TUB Transcription Factor Family AT2G18280 58.6 8.2e-135 477.2
Blo12g00905 BCT 1 410 TUB Transcription Factor Family AT2G18280 55.0 1.4e-121 433.3
Blo01g01567 BCT 1 412 TUB Transcription Factor Family AT2G18280 56.1 2.6e-120 429.1
Blo12g00786 BCT 1 427 TUB Transcription Factor Family AT2G18280 53.0 1.2e-117 420.2
Blo01g01728 BCT 1 424 TUB Transcription Factor Family AT2G18280 52.9 2.0e-117 419.5
Blo02g00865 . 1 422 TUB Transcription Factor Family AT2G18280 52.2 3.8e-116 415.2
Blo01g00087 . 1 384 TUB Transcription Factor Family AT2G18280 53.8 2.0e-112 402.9
Blo13g00300 . 12 437 TUB Transcription Factor Family AT2G18280 50.3 7.5e-112 401.0
Blo01g00087 . 1 384 TUB Transcription Factor Family AT2G47900 67.2 7.1e-158 553.9
Blo12g00786 BCT 1 427 TUB Transcription Factor Family AT2G47900 57.0 5.5e-134 474.6
Blo02g00865 . 1 422 TUB Transcription Factor Family AT2G47900 56.2 2.3e-132 469.2
Blo01g01728 BCT 1 424 TUB Transcription Factor Family AT2G47900 56.2 2.6e-131 465.7
Blo15g00775 . 1 445 TUB Transcription Factor Family AT2G47900 53.8 8.2e-130 460.7
Blo13g00300 . 12 437 TUB Transcription Factor Family AT2G47900 56.6 1.1e-129 460.3
Blo01g01567 BCT 1 412 TUB Transcription Factor Family AT2G47900 55.1 5.3e-121 431.4
Blo16g00048 . 1 440 TUB Transcription Factor Family AT2G47900 52.4 6.1e-117 417.9
Blo12g00905 BCT 1 410 TUB Transcription Factor Family AT2G47900 52.9 1.7e-114 409.8
Blo10g00732 . 48 377 TUB Transcription Factor Family AT2G47900 50.8 1.5e-99 360.1
Blo06g00639 . 80 305 TUB Transcription Factor Family AT1G16070 59.1 3.6e-71 265.4
Blo01g01728 BCT 65 424 TUB Transcription Factor Family AT1G43640 69.1 3.0e-147 518.5
Blo12g00786 BCT 65 427 TUB Transcription Factor Family AT1G43640 66.4 2.0e-143 505.8
Blo02g00865 . 65 422 TUB Transcription Factor Family AT1G43640 67.4 5.8e-143 504.2
Blo15g00775 . 64 445 TUB Transcription Factor Family AT1G43640 64.2 1.4e-141 499.6
Blo13g00300 . 76 437 TUB Transcription Factor Family AT1G43640 63.7 2.6e-135 478.8
Blo01g00087 . 47 384 TUB Transcription Factor Family AT1G43640 51.9 1.7e-102 369.8
Blo12g00905 BCT 64 410 TUB Transcription Factor Family AT1G43640 50.4 2.0e-98 356.3
Blo01g01567 BCT 31 412 TUB Transcription Factor Family AT1G47270 61.8 4.9e-132 468.0
Blo12g00905 BCT 31 410 TUB Transcription Factor Family AT1G47270 63.3 4.2e-131 464.9
Blo16g00048 . 1 440 TUB Transcription Factor Family AT1G47270 54.5 3.2e-123 438.7
Blo01g01728 BCT 48 424 TUB Transcription Factor Family AT1G47270 56.7 1.4e-115 413.3
Blo12g00786 BCT 31 427 TUB Transcription Factor Family AT1G47270 52.2 2.8e-111 399.1
Blo02g00865 . 48 422 TUB Transcription Factor Family AT1G47270 54.3 5.3e-110 394.8
Blo13g00300 . 42 437 TUB Transcription Factor Family AT1G47270 51.4 2.1e-106 382.9
Blo10g00732 . 1 377 TUB Transcription Factor Family AT1G53320 68.1 5.8e-146 514.2
Blo01g00087 . 98 384 TUB Transcription Factor Family AT3G06380 61.1 2.8e-92 335.5
Blo02g00865 . 116 422 TUB Transcription Factor Family AT3G06380 52.9 1.0e-81 300.4
Blo01g01728 BCT 116 424 TUB Transcription Factor Family AT3G06380 51.9 2.7e-79 292.4
Blo01g01567 BCT 117 412 TUB Transcription Factor Family AT3G06380 51.3 1.8e-78 289.7
Blo12g00905 BCT 115 410 TUB Transcription Factor Family AT3G06380 52.2 2.8e-76 282.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005909 3 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13066 PF01167 Tub 1.30E-102 CL0395 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00905 Blo_Chr12 FPKM 3.630522 4.120766 2.966465 4.554712 9.525628 9.524971 9.65728 5.798958 6.022257 6.514645