Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00908 ATGGGCGAGAGCCATGACACTACTACTGGTGGGATAATGCCATCTTCTTCTCTCCATGCAGTCCACAGTGAGTGTGGTCAAGAATCATGTCATTTGGCATTGCAGGGAGGACAAAAAATCAATATAAGAAAACGGATGTTTTGCAATCGGCCTTTGAATATGAAGAACATCCGTGCTGTAGGGTTTGACATGGATTACACATTGGCGCAATACAAGCTTGAAACTTTTGAAACTCTCACGTATGAAGGCACAATAAAAAAATTGGTGTATGACTTGGGATATCCTCTAGAGTTGCTAGATTGGTCATTTGATTGGAATTACATGGTCAGAGGCTTGGTTCTTGACAAAAAAAGAGGAAACATCTTGAAGATGGATCAACACAAGTACGTTAAAGTAGCCTACCATGGATTCAAGGAATTATCCAAGGAAGTTAAAGTTGCAACTTATGGAAATACTCTAGTAAGGGATTCTTTTGATGAGCCCGGTTATGCTCTCATCGATACCCTCTTTTCACTCGCTGAAGCCTACATGTTTGCTCAACTGGTTGAGTTTAAAGATACTAATCCAGAAAAAGTCCCAGATTATGCTCATATGTACAAAGACGTTCGAGCTGCAGTTGATTTGTGCCATCGCGATGGAACTCTGAAGCAAATGGTTGCTAAAGATCCTAAAAGGTATATAAATGAAGACAATGCTTTAGTACCGATGCTGAAAATGTTTAAAGATTCTGGTCGTTTTACTTTCTTGGCAACAAACAGTTTATGGGATTATACTAACATTGTGATGAATTTCCTTTGTTGCTCGCCAACAATGGATGGTATTAACAAATGCACATTTGACTGGCTTCAGTATTTTGACATTGTCATTACTGGCTGTAACAAACCAAGCTTTTTTCACGAGGACAAGATCTCTAATCTATTTGAGGTTGAGCTAGAGTCGGGAATGCTTATTAATACTAATAATGGCTCTCCTATTCCCCAGGTTAGCGTTGCTAAGCTTGTTTCTTTGGTGGGAAGTCCTTCTGCATATTTCTCAGGAGTTAACAAGACCTATAAAGTTTTCCAGGGAGGCAATGTTGCACATCTGCATAGGCTTTTTTCCATCGAGTCAAGCTCCCAGGTTCTCTATGTTGGGGATCACATCTATGGGGATATACTGCGGAGCAAGAAGGCTCTTGGATGGAGAACAATGCTTGTTGTTCCGGAGCTTGAAAGAGAGGTTGAACTCCTCTTGGAATTGAAGAATACATGCAAGGAACTTCAGTTATTAAGAAGCGAAAACGACCACATTGACAACAAAATACATCATTTAAAGTGGCGACTCAAGTATCATATCGATGATGATGAAGCGAAGCAGAAATCATCTTCTCATCATGATGCATTGGAGGCTCAAAGGGAGCAAGTTCGGCTCAACCATCAACTCGCTCATCTTGCATATCATCAAAAGTTTCACAAGATTTGGGGACAACTCATGAAAACTGGTTACCAAAACTCCCGCTTTGCTCATCAGGTTGAAAGATTTGCGTGCCTTTACACCAGTCAAGTCACCAACTTAGGCCTCTATTCCCCAGATAAATATTTCAGACCACATGAAGATTTCATGGCCCATGAATGGCAGACCTTGGCTGTTCAAGAGAAGCTTTATTAG 1647 40.68 MGESHDTTTGGIMPSSSLHAVHSECGQESCHLALQGGQKINIRKRMFCNRPLNMKNIRAVGFDMDYTLAQYKLETFETLTYEGTIKKLVYDLGYPLELLDWSFDWNYMVRGLVLDKKRGNILKMDQHKYVKVAYHGFKELSKEVKVATYGNTLVRDSFDEPGYALIDTLFSLAEAYMFAQLVEFKDTNPEKVPDYAHMYKDVRAAVDLCHRDGTLKQMVAKDPKRYINEDNALVPMLKMFKDSGRFTFLATNSLWDYTNIVMNFLCCSPTMDGINKCTFDWLQYFDIVITGCNKPSFFHEDKISNLFEVELESGMLINTNNGSPIPQVSVAKLVSLVGSPSAYFSGVNKTYKVFQGGNVAHLHRLFSIESSSQVLYVGDHIYGDILRSKKALGWRTMLVVPELEREVELLLELKNTCKELQLLRSENDHIDNKIHHLKWRLKYHIDDDEAKQKSSSHHDALEAQREQVRLNHQLAHLAYHQKFHKIWGQLMKTGYQNSRFAHQVERFACLYTSQVTNLGLYSPDKYFRPHEDFMAHEWQTLAVQEKLY 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27261759 27265480 - BLOR04927 Blo12g00908 68169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00908 548 CDD HAD_cN-II 47 513 - -
Blo12g00908 548 TIGRFAM HAD-IG-Ncltidse: HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase 46 419 IPR008380 -
Blo12g00908 548 Coils Coil 403 423 - -
Blo12g00908 548 PIRSF NT5C2 27 547 IPR016695 -
Blo12g00908 548 Pfam 5' nucleotidase family 47 538 IPR008380 -
Blo12g00908 548 SUPERFAMILY HAD-like 45 539 IPR036412 -
Blo12g00908 548 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 35 540 IPR008380 -
Blo12g00908 548 Gene3D - 204 429 IPR023214 -
Blo12g00908 548 PANTHER CYTOSOLIC PURINE 5-NUCLEOTIDASE 35 540 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00908 - - - jre:108982271 782.326
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo12g00908 Blo18g00815 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00908 Blo-Chr12:27261759 Blo17g00800 Blo-Chr17:25748760 0 dispersed
Blo12g00908 Blo-Chr12:27261759 Blo18g00815 Blo-Chr18:24127582 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g945 . Blo12g00908 . Bda03g00260 . Bpe04g00213 Bma04g00209 . . . . . . Car12g00446 . . Cpe07g00424 . . . . . . . Cla08g01488 Cam08g1978 Cec08g1552 Cco08g1689 Clacu08g1668 . Cre08g1451 . . Cone17ag1342 Cone20ag0139 . . . Cme03g01956 . Blo18g00815 Bda08g01284 Bda01g01493 Bpe02g01689 Bpe05g00090 . Bma05g00120 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g01395 Csa02g02053 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003481 3 3 3 2 3 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 3 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00908 Blo_Chr12 FPKM 20.178719 23.601744 15.870956 17.414717 29.22644 29.135511 27.237211 6.596013 5.886875 6.866201