Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00912 ATGCAACCTCCAAAAGATCCTTCACCTCCTGGAATTGATTTCTTCTGTCCCGTCAAGGAGCTGTTCCTGTCTCTGGAAAAAATACAGAGTGGATCGGCTCTTCCAGAAAATGTCATTGCTGATATTAATCCTTTCCAGCATCAGCCATCGAATTTGCCTGAGGATGTCTGGTTTTTTGTCCGTCCTGGGGAGAATGCACGTACTAATTTCGGAGTCTGGAAGATTAAAGGGGAGTTTTGTGGCTTATTCTCGAACCAATTTATTACTGGTTGTCAAACTACTTTTGAATACTATGAAGGGCAAGCTCCTCATGCACTCAAAACAGATTGGTTGATGCAAAAATACTGGATAATTCAGAAGAAAATAGGTGAAAATTGCAAGACTAAGGAAGCTAGTTCGTTATTTAGAGTTTTTTTGGGCGGTGAAGTAAGACAAAATCATACTCTCTCCCAACAGTCAGTCAGTCCTACTGAAAACGGTCCAGGGACTTTTGGTTCAACCAGCAATTCTCAGGCAAGTAAGGAGGATGCGGCCGACGAATTAAGAGTCGAAAGACAAATCTCTGAAATTCATCGTCAGCATCTAGAAGATGTGGATGAATCTGATTATCTGTCTGGAGGTGACTTCTTAGAACTGCGTGATCTAGATATCCCCCCTTCTCCATCGTCCAGCTCAGAAAATTCAAGTTGCTTGACAATGTCATCGGATGCATGCTTTGATTCACTGGATTTGTTCCAAGATATAGAGCATGCAATTAGCCTAGACTTGGTTCATAGAGATGCCGCTTGCAAGTCCACAACCGCGGCGCCTCTGAGAATAAATGAGGGTGTAGTGCTCCCATCTTCCTCGGGAATGCTTGAAGCAGTAGAAAGCTCTATCAATGGCGGATTCTCACAGCTTCAGGGCTTTGGCGATAGTAGCGAGGAGGAGCTATCCGTGCTTCCTCGTCATACTAAAGTTGTGGTAACCGGAAATAACCGTACCAAATCGGTGCTCGTCGGACTTCAAGGAGTTGTCAAGAAAGCTGTTGGATTAGGCGGATGGCATTGGCTGAATGAGACGGTGGATCTGTTGAACTTTGCACTTTTTCATGTTCTTACGAACGGAATAGAGGTAAAGCTACAACGAAATGCTCTTAGTGTGATTGAAGCTCCCACTGGTAATGAGGAAGACAATGATCTTGAATTCGAAAATGTACAGTGGAACGGATCAGATATGGCTTCAGATTACACAAAAAAGTCGCACAGATCTAGGCACAGAATGCAGAAATCATCTGGCTCATCTTATAAGCCAATGAGCAGATCCTTATCTTGTGACTCACAATATAAAGGGTCAATTTCAACTCCTCGTGGCTCAACAAAGGTTGACCTTCGGAAATTGGAGATGGCTGCTCTGTGGAGATATTGGCGACACTTCAATCTTGTCGATGCCATTCCAAATCCGTCAAAGGAGCAATTGGTCGATGTAGTTCAAAGGCATTTTATGTCACAACAAATGGATGAGGTGCAGGTGATAATGGGGTTCACAAAGGCCGCAAAGAGACTCAAGATGGTCTGCAAATGA 1563 43.76 MQPPKDPSPPGIDFFCPVKELFLSLEKIQSGSALPENVIADINPFQHQPSNLPEDVWFFVRPGENARTNFGVWKIKGEFCGLFSNQFITGCQTTFEYYEGQAPHALKTDWLMQKYWIIQKKIGENCKTKEASSLFRVFLGGEVRQNHTLSQQSVSPTENGPGTFGSTSNSQASKEDAADELRVERQISEIHRQHLEDVDESDYLSGGDFLELRDLDIPPSPSSSSENSSCLTMSSDACFDSLDLFQDIEHAISLDLVHRDAACKSTTAAPLRINEGVVLPSSSGMLEAVESSINGGFSQLQGFGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLNETVDLLNFALFHVLTNGIEVKLQRNALSVIEAPTGNEEDNDLEFENVQWNGSDMASDYTKKSHRSRHRMQKSSGSSYKPMSRSLSCDSQYKGSISTPRGSTKVDLRKLEMAALWRYWRHFNLVDAIPNPSKEQLVDVVQRHFMSQQMDEVQVIMGFTKAAKRLKMVCK 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27313470 27318968 + BLOR04931 Blo12g00912 68173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00912 520 MobiDBLite consensus disorder prediction 148 181 - -
Blo12g00912 520 MobiDBLite consensus disorder prediction 405 450 - -
Blo12g00912 520 MobiDBLite consensus disorder prediction 424 450 - -
Blo12g00912 520 Gene3D - 436 520 IPR038291 -
Blo12g00912 520 PANTHER HISTONE DEACETYLASE COMPLEX SUBUNIT SAP30 SIN3-BINDING PROTEIN 285 520 - -
Blo12g00912 520 MobiDBLite consensus disorder prediction 148 174 - -
Blo12g00912 520 Pfam Sin3 binding region of histone deacetylase complex subunit SAP30 460 513 IPR025718 GO:0005515
Blo12g00912 520 Gene3D NAC domain 20 142 IPR036093 GO:0003677|GO:0006355
Blo12g00912 520 PANTHER SAP30 285 520 IPR024145 -
Blo12g00912 520 Pfam No apical meristem (NAM) protein 9 115 IPR003441 GO:0003677|GO:0006355
Blo12g00912 520 ProSiteProfiles NAC domain profile. 8 140 IPR003441 GO:0003677|GO:0006355
Blo12g00912 520 SUPERFAMILY NAC domain 8 139 IPR036093 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00912 - - - qsu:112021340 394.815
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g01113 Blo-Chr2:42265109 Blo12g00912 Blo-Chr12:27313470 2.73E-49 dispersed
Blo12g00912 Blo-Chr12:27313470 Blo13g00609 Blo-Chr13:28516477 5.04E-13 dispersed
Blo12g00912 Blo-Chr12:27313470 Blo17g00813 Blo-Chr17:26199053 1.08E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g894 . Blo12g00912 Bda01g00544 . Bpe02g00403 . . Bma01g02305 Cmo05g00232 Cmo12g00438 . . . Car12g00462 . . Cpe07g00440 Bhi04g00274 Tan02g1932 . . Hepe10g0668 . Lcy13g2006 Cla08g01512 Cam08g2001 Cec08g1577 Cco08g1713 Clacu08g1691 . Cre08g1474 . . Cone17ag1323 Cone20ag0153 . . . Cme03g01977 . . . . . . . . . . . Cma12g00491 Cma05g00225 Car05g00187 . Cpe11g00186 . . . . . . . . . . . . . . . Lsi08g01416 Csa02g02029 Chy03g01483 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003745 1 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 3 1 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13069 PF02365 NAM 1.10E-06 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00912 Blo_Chr12 FPKM 0.847148 0.868529 6.823281 6.536268 46.458424 35.314507 50.733982 22.189968 21.102905 23.668167