Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00913 ATGGCTATCCGGAGAACCCTCTTGAGGTGGTCATTCGACGATCGCGGTGGAGCTAAAGTGCCGGAGGCGGCGTTTTATCACTCTCCCAGATTAGTTCAATCCCCCCTAACCGAGATTCCCCCTACCGCCGCAAAATCAAACTTCCATCGAGTATACATCAGCTCGCCCGGAAACGCCGCTAGAGGATATTTCAGGCGGTTATTCGGGCATAGAGTTTTATATCAGTCTCCTACGAGAGTGCCGGAGTTCGCATCACCTCAGGTATCTGACATGCTGAAAGAAAATCTCAGTGGCATCAACATAACAAGAAACCGCATCCGGGCCGACGGCCTCAATCCTCCGGTATCGGAATCTCCGGCTTTCGAATCTCTTTATGGAATATCAATCGAGGATGCGAGAAAGATTCTGAAGCTTTCCTACTTGGAGAAACTCAAAAGGAATCTAAGAGATCTTCAGAAGAACTCGATTTCGTACTCGGATTTCACTAAAATCTGCATTCAAAGCTGTGAAAACCACGATCAGGGCACTCAGCTTGCCCGAATGTTGGACGAAACGAGAAGCGTCATCATTCTCGGAAATATTGTATTTCTCCGACCCGAACAGGAAATTAACTTTGTTTATGTAACATTTAAGCCAAGAATAGCGAATGGAATCACTGTGGCAAGATCGATGTCGGCGCTGTTATCGGAGTCAATTTCGGCGCCGGAGAAAATGGAAGAAGTAAAGAAAATGAAGAAGGAAGAAGAGAGAATAGAGGAAAAGGCGAAGGTGCTGGTGAGAGGCGAGCTGTACTGCGGGCTAGTCTACCTTATAATCCAAACAGCGGCGTTCATGAGGCTGACCTTCTGGGAGCTAAGCTGGGACGTAATGGAACCCATTTGCTTCTTCTTCACTTCCATCTATTTCGCTTTAGCCTATGGATTCTTCATGAAAACCTCCATCGAACCCTCCTTCGATGGCTACTTTCAGAGCAGGCTGAGAACAGAACCAACCAGCTTTGGAGACAACTGCAGTTTTCTTTGCAGTGGATTAGATTACATAGCAAACCAATTCACAATTGTTTGTCCTTGCGTTGAATTAGTCCAGGAAAGATCACTGGGGGTAGAGGATTCCAAGAAGGGATCTTCTACTTTCTGCACCATTGCTCGAATTTGCGTGGGTTTCTACACCAAGGCTGCAAATGCCAAATCTGAAGAAAAGAAGCTTCAATTGGATTTGGTAGCTGAAAACATAGTCTCACATTCTTGCATCCATGATCAGATACTTGAACAAAGGAGATTACCTGGCCATAAAGTATATTCTGTTACTCCCCAAGTCTACGGGGTTTCTACTATACCAAAACGCATCCACCACAGAAGTAGGGAATTGCTAGGACTTTCTGAATTATCAGAGCATCAGAAGGATGGAAAACAGCCTATTAGAATATATTTAAATTATGATGCCGTCGGTCACTCAGCTGACAGAGATTGTCAAAATCCTGGTGACATTGTGAAGCTTGGAGAGCCACCTTTGACTACTCTTCCTGGGATTCCTACTTGCAATCCTCGCAGCGATCCTCCAATTTTGGGTGATTGTTGGTATAACTGCACTATTGAAGATATATCAGGGGAAGACAAAAGGCATCGCCTACACAAGGCTTTAGGACAGACAGCAGACTGGTTCAAGAGCGCTTTAGCTGTTGAACCGGTGAAAGGGAACTTGAGGCTAAGTGGGTATTCTGCTTGCGGACAAGATGGCGGTGTACAACTTCCTTGCGAATATATTGAAGAGGGTGTTCCTGATGCTGATTTGGTTCTACTAGTGACCACAAGACCCACCACTGGGAATACTCTTGCATGGGCAGTGGCTTGTGAACGTGATCAATGGGGACGTGCAATTGCTGGTAGGCATGTGAATGTTGCTCCTCGACATTTGACTGCCGAGTCAGAAACTTTACTATCAGCTACTCTTGTACACGAGGTTCTACATGTTCTTGGTTTTGACCCACATGCCTTCGCCCATTTCAGAGATGAAAGGAAAAGAAGACGCACTCAGGTTACAGAAAACATTATGGATGAGAAGCTTGGACGAATGGTCACAAGAGTGGTGCTTCCACGGGTTGTTATGCATTCTCGGTATCATTATGCGGCATTTTCAGAGAACTTTACAGGTTTGGAGCTAGAAGATGGAGGGGGACGTGGTACATCAGGGTCTCATTGGGAGAAAAGGCTTCTGATGAATGAAATTATGACTGGTTCAGTTGATACCCGATCTGTAGTTTCAAAAATGACACTCGCTTTGTTGGAAGATAGCGGATGGTACCGGGCCAATTATAGTGTTGCAGACCGTCTTGATTGGGGTCGTAACCAAGGAATTGATTTTGTTAAATCACCTTGCAATCTCTGGAAGGGAGCATATCATTGTAACTCAACTCAATTGTCAGGCTGTACATATAATAGGGAGGCAGAGGGTTATTGCCCGATAGTAAGTTACAGTGGCGACCTTCCTCAATGGGCCCAATATTTTCCACAGTCCAACAAGGGTGGGCAGTCATTGTTGGCTGATTACTGTACATACTTTGTAGCTTACTCCGATGGATCATGTACAGATACTAACAGTGCTCGTCCACCGGACAGAATGTTGGGTGAAGTGCGGGGAAATAACTCAAGGTGTATGATATCATCACTTGTACGAACTGGGTTTGTTCGAGGTTCTACAACCCAAGGAAATGGCTGTTATCAGCACAGATGCGTCAACAATTCCTTGGAGGTTGCTGTGGATGGTATGTGGAAAGTTTGCCCCGAAGCTGGTGGCCCAGTTCAATTTTCAGGCTTCAATGGTGAATTGATCTGCCCTTCATATCATGAACTTTGTAGCACAGACCCAGTTCCAGTATCAGGGCAGTGTCCCAATTCTTGTAATTTCAATGGAGATTGTGTTAATGGAAGATGCTTCTGTTTCCTAGGGTTTCATGGCAACGACTGTCACGAACGTGCTTGTCCTACTCAATGTAATGGACATGGTAGATGCCTTTCTAATGGAATTTGTGAATGTGAAAATGGCTTCACTGGCATTGACTGCTCTACTGCTGTTTGTGATGAGCAATGTAGCCTCCACGGCGGGGTGTGCGACAATGGCATATGCGAATTCAGATGCTCCGACTACGCGGGCTATTCCTGCCAAAACAGCTCCGGGCTTCTCTCCACTCTTACGGTTTGCAAAAATGTTCTCAAAAGAGACATTCCCGGTCAGCACTGTGCTCCGAGTGAACCTAGTATTTTACAGCAGCTCGAAGTAGTAGTCGTTATGCCTAATTACCATCGTTTATTCCCTGGCGGTGCGAGAAAATTGTTCAATATCTTTGGTAGTGGTTACTGCGATGCAGCTGCAAAGCGGTTGGCTTGCTGGATATCTATCCAGAAGTGTGATGAAGATGGTGACAATAGGCTCAGAGTGTGCCATTCCGCATGTCAGTCGTATAATCTAGCGTGCGGGGCTTCGCTCGACTGCTCAGATCAGACACTCTTCAGTAGCGAAGAGGAGGGCATCGGACAATGCACGGGTTTCAGCGAGATGAAATCCTCGTGGTTTAATCGGCTGCGAAGTCACTTATTTTCAAGTAGTAGTTCGCCCAGAGGAGGTGGGTTTGGGGAGTCAACAAGCGAGCAGCCACTAAGCCCTTCTTTTTCTAATAACAGCAGCAACAACAACAGTGCTGCCAATTTTGAGTGCAATATTTGCTTTGACTTGGCTCAAGATCCTATTGTAACATTATGCGGCCATCTTTTCTGCTGGTCATGCCTCTACAAATGGCTCCATATTCACTCGCATTCCCATGAATGCCCAGTTTGCAAGGCCCTCGTAGAAGAGCAGAAGTTGGTTCCCTTATATGGTAGAGGAAAGACATCTACTGACCCGAGATCAAAATCGATTCCTGGCGTTAACATTCCGAATCGCCCTCCAGCAGGACAAAGACCTGAAAGAGCTCCTCCACCAGAAAGAACTCACTTTCCTCCGCATGAGTTTGGATCCATGGGAGGATTTGCACCCATGGCAACTGCAAGATTGGGCAACTTCACATTCTCAGCAGCTTTTGGTGGTCTTATCCCACCTTTGTTCGACCTTCATTTGCATGGCTTCCCTGATCCTGCAATGTATGGTCCAGCTGCAGATTTTTCTTACGGATCTTCTAATTTCTTCCACGGAGGAGGCATTGCGAATAGATACCATAATCACACACGTCAAAGGCAACAGGATTATTTTCTGAAGAGGCTGCTGTGTATCATAGGATTTTGTGCTCTTCTTGCATTTATCTGGCAATAG 4302 45.93 MAIRRTLLRWSFDDRGGAKVPEAAFYHSPRLVQSPLTEIPPTAAKSNFHRVYISSPGNAARGYFRRLFGHRVLYQSPTRVPEFASPQVSDMLKENLSGINITRNRIRADGLNPPVSESPAFESLYGISIEDARKILKLSYLEKLKRNLRDLQKNSISYSDFTKICIQSCENHDQGTQLARMLDETRSVIILGNIVFLRPEQEINFVYVTFKPRIANGITVARSMSALLSESISAPEKMEEVKKMKKEEERIEEKAKVLVRGELYCGLVYLIIQTAAFMRLTFWELSWDVMEPICFFFTSIYFALAYGFFMKTSIEPSFDGYFQSRLRTEPTSFGDNCSFLCSGLDYIANQFTIVCPCVELVQERSLGVEDSKKGSSTFCTIARICVGFYTKAANAKSEEKKLQLDLVAENIVSHSCIHDQILEQRRLPGHKVYSVTPQVYGVSTIPKRIHHRSRELLGLSELSEHQKDGKQPIRIYLNYDAVGHSADRDCQNPGDIVKLGEPPLTTLPGIPTCNPRSDPPILGDCWYNCTIEDISGEDKRHRLHKALGQTADWFKSALAVEPVKGNLRLSGYSACGQDGGVQLPCEYIEEGVPDADLVLLVTTRPTTGNTLAWAVACERDQWGRAIAGRHVNVAPRHLTAESETLLSATLVHEVLHVLGFDPHAFAHFRDERKRRRTQVTENIMDEKLGRMVTRVVLPRVVMHSRYHYAAFSENFTGLELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYRANYSVADRLDWGRNQGIDFVKSPCNLWKGAYHCNSTQLSGCTYNREAEGYCPIVSYSGDLPQWAQYFPQSNKGGQSLLADYCTYFVAYSDGSCTDTNSARPPDRMLGEVRGNNSRCMISSLVRTGFVRGSTTQGNGCYQHRCVNNSLEVAVDGMWKVCPEAGGPVQFSGFNGELICPSYHELCSTDPVPVSGQCPNSCNFNGDCVNGRCFCFLGFHGNDCHERACPTQCNGHGRCLSNGICECENGFTGIDCSTAVCDEQCSLHGGVCDNGICEFRCSDYAGYSCQNSSGLLSTLTVCKNVLKRDIPGQHCAPSEPSILQQLEVVVVMPNYHRLFPGGARKLFNIFGSGYCDAAAKRLACWISIQKCDEDGDNRLRVCHSACQSYNLACGASLDCSDQTLFSSEEEGIGQCTGFSEMKSSWFNRLRSHLFSSSSSPRGGGFGESTSEQPLSPSFSNNSSNNNSAANFECNICFDLAQDPIVTLCGHLFCWSCLYKWLHIHSHSHECPVCKALVEEQKLVPLYGRGKTSTDPRSKSIPGVNIPNRPPAGQRPERAPPPERTHFPPHEFGSMGGFAPMATARLGNFTFSAAFGGLIPPLFDLHLHGFPDPAMYGPAADFSYGSSNFFHGGGIANRYHNHTRQRQQDYFLKRLLCIIGFCALLAFIWQ 1433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27320350 27331427 + BLOR04932 Blo12g00913 68174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00913 1433 Coils Coil 234 254 - -
Blo12g00913 1433 Pfam Leishmanolysin 527 952 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Blo12g00913 1433 SMART ring_2 1237 1277 IPR001841 -
Blo12g00913 1433 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 468 957 - -
Blo12g00913 1433 SUPERFAMILY RING/U-box 1233 1284 - -
Blo12g00913 1433 Gene3D - 465 657 - -
Blo12g00913 1433 MobiDBLite consensus disorder prediction 1201 1225 - -
Blo12g00913 1433 Gene3D Leishmanolysin domain 3 796 854 - -
Blo12g00913 1433 ProSiteProfiles Zinc finger RING-type profile. 1237 1278 IPR001841 -
Blo12g00913 1433 MobiDBLite consensus disorder prediction 1291 1327 - -
Blo12g00913 1433 Pfam Zinc finger, C3HC4 type (RING finger) 1236 1277 - -
Blo12g00913 1433 ProSitePatterns EGF-like domain signature 1. 1009 1020 IPR000742 -
Blo12g00913 1433 Gene3D Laminin 992 1023 - -
Blo12g00913 1433 Gene3D Laminin 961 990 - -
Blo12g00913 1433 ProSitePatterns EGF-like domain signature 2. 1009 1020 IPR000742 -
Blo12g00913 1433 CDD RING-HC_AtRMA_like 1236 1279 - -
Blo12g00913 1433 Pfam EGF-like domain 993 1020 IPR013111 -
Blo12g00913 1433 ProSiteProfiles EGF-like domain profile. 989 1021 IPR000742 -
Blo12g00913 1433 Gene3D Leishmanolysin , domain 2 666 792 - -
Blo12g00913 1433 PANTHER METALLOENDOPEPTIDASE/ZINC ION-BINDING PROTEIN 381 1186 - -
Blo12g00913 1433 Gene3D Leishmanolysin domain 4 856 951 - -
Blo12g00913 1433 ProSitePatterns Zinc finger RING-type signature. 1252 1261 IPR017907 -
Blo12g00913 1433 Pfam Mitochondrial calcium uniporter 173 327 IPR006769 -
Blo12g00913 1433 PRINTS Leishmanolysin (M8) metalloprotease family signature 601 630 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Blo12g00913 1433 PRINTS Leishmanolysin (M8) metalloprotease family signature 755 784 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Blo12g00913 1433 PANTHER LEISHMANOLYSIN-LIKE PEPTIDASE 381 1186 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Blo12g00913 1433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1210 1291 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo12g00913 Blo17g00814 CCT
Blo12g00913 Blo17g00814 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00584 Blo-Chr5:14254987 Blo12g00913 Blo-Chr12:27320350 4.00E-55 dispersed
Blo06g00237 Blo-Chr6:11624933 Blo12g00913 Blo-Chr12:27320350 1.29E-79 dispersed
Blo07g01278 Blo-Chr7:32978051 Blo12g00913 Blo-Chr12:27320350 3.83E-23 dispersed
Blo12g00913 Blo-Chr12:27320350 Blo14g00047 Blo-Chr14:294325 2.07E-24 dispersed
Blo16g00491 Blo-Chr16:19569722 Blo12g00913 Blo-Chr12:27320350 6.50E-22 dispersed
Blo12g00913 Blo-Chr12:27320350 Blo17g00814 Blo-Chr17:26292687 6.12E-85 wgd
Blo12g00913 Blo-Chr12:27320350 Blo04g01010 Blo-Chr4:13226923 1.43E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00913 K01404 - csv:101217702 1461.43