Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00916 ATGGAGATGGATGTTGATACGATTAGTGGCTTGCCAGGGAATGTTTTGGATCAAATTCTCTCCAAACTGCCGATCAGAGATGCTGTTAGAACGAGTATATTATCGAGCAAATGGAAGTTCAAATGGTCGACCATTCCTCGTCTAATATTTGACAGTCAGTGCGTGTCTATCTCTTCTCACGATCAAGATCAAACACCGCATAATGAACTTGTGAGGATCGTCGATCACGTTCTCTTACTCCACCACGCCCCAGTTCTTGAGTTCAAGCTCTCTCACAATGATCTTTTTGGTATTAGCGACATTGACAAGTGGATTCGTCACCTTTCAAGAAATGGTATCAGGGAATTGGTTCTGGAAATTTGGAAGGGGAATAGATATCTGATTCCTTCTTCTTTATTTCATTGCCAGTTTTTGGAGAAATTAGAGTTGTATAACTGTCTCATAAAACCTCCGTTTTTGCTTCAGAATCTCAGGAGTTTGAAGAGGCTTGATCTTCAACAGGTGACTTTAGCCCAAGATGGTTTTGAAAAATTGATTGCTAGCTGCCCTTTGCTGGAGAGGTTGAAATTGATGAGTTTTGACGGTTTCACTCATCTAAATATAGATTCGCCAAGTCTTCAATTTTTATGTGTTGTGGGTATTTTTCACGGCATCAATTTCAAGAATGCTTTGAATTTGGTTGAAGTTTCTATGGGTTTATATGCAAACATTGAGCATGACTTGAACCGGGCTTATGGTGAATCCGGCAATTTGTTGAAATTTTTATCTACTCTTCCCCGTATTCGAAAATTGGAGGTTCATGGTCATTTTTTGAAGCCCGAGTTTTTGTTTTCCGAACGTGATATACGACGAGCAATTTTTCTTGTTATCTTAGAAATTTTGGCCAAACGTGCTTTTTTTTGTCATTTGGCTTTTGGAATGATTCACTCAAAGCTGCCTAATCTTTGTGTTCATCTGAATTATCTTTCTCTGCACATAAACTTCAATAACTTGGATGAGATTTTAACTTCTCTATGCATCTTAAGAAGCTCTCCAAATCTACAAGTTCTACAAGTATTGGCTAGTTCAAATGCACCGGCAGTCATGCCTTCAGGTTCTAATTTGCAAGATCAAGATCACTGCTGGGATCTGATTTCTCAATTCAGTTATTTACGACTAGTAAAAGTTTTTGGCATATCTGGTGTAAGATCAGAAATGAGTTTCATCAGTTTTCTGCTTCTTCAATACGTCAAAGTACCTTTAGTGACTCTGGGATATGAGAGTGGCTATGATGTGTTTGTCAAAGCTCACGGTGGTGGCCTCTCCGGCCAGGCTCAGGCAATATCCCTCGAACTCAAGAAAGCCCGGAAAGCCCCTCAATATTCCAAACGTTGA 1374 39.59 MEMDVDTISGLPGNVLDQILSKLPIRDAVRTSILSSKWKFKWSTIPRLIFDSQCVSISSHDQDQTPHNELVRIVDHVLLLHHAPVLEFKLSHNDLFGISDIDKWIRHLSRNGIRELVLEIWKGNRYLIPSSLFHCQFLEKLELYNCLIKPPFLLQNLRSLKRLDLQQVTLAQDGFEKLIASCPLLERLKLMSFDGFTHLNIDSPSLQFLCVVGIFHGINFKNALNLVEVSMGLYANIEHDLNRAYGESGNLLKFLSTLPRIRKLEVHGHFLKPEFLFSERDIRRAIFLVILEILAKRAFFCHLAFGMIHSKLPNLCVHLNYLSLHINFNNLDEILTSLCILRSSPNLQVLQVLASSNAPAVMPSGSNLQDQDHCWDLISQFSYLRLVKVFGISGVRSEMSFISFLLLQYVKVPLVTLGYESGYDVFVKAHGGGLSGQAQAISLELKKARKAPQYSKR 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27339185 27341791 + BLOR04935 Blo12g00916 68177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00916 457 SUPERFAMILY F-box domain 4 48 IPR036047 GO:0005515
Blo12g00916 457 SUPERFAMILY RNI-like 105 271 - -
Blo12g00916 457 Pfam Ribosomal protein S9/S16 401 448 IPR000754 GO:0003735|GO:0005840|GO:0006412
Blo12g00916 457 ProSiteProfiles F-box domain profile. 5 39 IPR001810 GO:0005515
Blo12g00916 457 Gene3D Ribonuclease Inhibitor 4 284 IPR032675 -
Blo12g00916 457 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 2 408 - -
Blo12g00916 457 PANTHER F-BOX PROTEIN-LIKE 2 408 - -
Blo12g00916 457 Pfam Leucine Rich Repeat 159 183 IPR013101 -
Blo12g00916 457 SUPERFAMILY Ribosomal protein S5 domain 2-like 391 457 IPR020568 -
Blo12g00916 457 Gene3D - 388 445 IPR014721 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00916 - - - pvy:116110603 415.616
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00101 Blo-Chr2:710647 Blo12g00916 Blo-Chr12:27339185 2.48E-14 transposed
Blo11g00816 Blo-Chr11:13400014 Blo12g00916 Blo-Chr12:27339185 1.33E-57 transposed
Blo01g01549 Blo-Chr1:55165282 Blo12g00916 Blo-Chr12:27339185 1.56E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g874 . Blo12g00916 . Bda03g00248 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019326 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00916 Blo_Chr12 FPKM 11.077658 12.130239 12.371538 12.606247 9.874676 9.752361 10.736771 13.283376 13.235685 14.818391