Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00936 ATGTTCCTCAGCTCAAACGCTTTGATGAAGAACTTGAAATCATCCCTACCAGATCTCTCATTGCACATTAGCCCACCATTAATATCAGATTCAAATTCTAAGGAACTGGGTTTTCAAGGATTTGAGAGAAAACCAGTAATGTACAGAGATGGGAGCTCAACCACAGAATCAGGCGGTAGTAGTGGAAGTGATTTAAGCCACGAAAACACTTTATTGCACCATCAAAATATCTGTACCATTCTTAGTTCTTCTGCTCAACCTAATCTTAGATTAGGATTTGAAAGACCAAGTTGGAATCCTCCAATATTTGTTCAAACTCAGCCAAGAAACTTCCACGGCTATCATCATCCTCATCTTCTTAACCAGGGTCGTCGTTTTCAACCTCAGTTAAATAGCATGGAGTTTAAAAGAAATGGAAGGATCATTCATGGCTGTAAGAGAAGTGTTAGAGCTCCAAGAATGAGATGGACGACCACCCTTCACTCTCATTTCGTACACGCAGTCAATCTTCTAGGAGGCCATGAAAGGGCAACGCCAAAATCAGTGTTGGAGCTGATGAATGTCAAGGATCTCACTTTGGCTCATGTAAAGAGCCATTTGCAGATGTACAGAACAGTGAAAAGCACTGAAAAAGGAACTGGTGATCAAGGGCAGCTTCATTTGAGTTTGAACCAGAGGCCTACAGTCGATGTCGCTGATCAAACTTTACCATCTGGAAAGGCCAACCCATCGCCATTATCACTGCAGAAGACCCAGAGGGGTTTTTGTGCCCCATTAATGGAGGCAAAGGAGTACATGGCCAACGCAATCCTTGAAGAGGCCTCCGTAAATGCCAACCCTTTGATACTAACGGTTCATGATTCTACAGATGTGGAAGAGAGGGTGGATTCTAATATCTCATCGTCGTCAGATAGGCCCCTCAATTTAGACTTCACTCTTGGAACGCCAGCCACTGTCTATGGCTGA 966 43.48 MFLSSNALMKNLKSSLPDLSLHISPPLISDSNSKELGFQGFERKPVMYRDGSSTTESGGSSGSDLSHENTLLHHQNICTILSSSAQPNLRLGFERPSWNPPIFVQTQPRNFHGYHHPHLLNQGRRFQPQLNSMEFKRNGRIIHGCKRSVRAPRMRWTTTLHSHFVHAVNLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTEKGTGDQGQLHLSLNQRPTVDVADQTLPSGKANPSPLSLQKTQRGFCAPLMEAKEYMANAILEEASVNANPLILTVHDSTDVEERVDSNISSSSDRPLNLDFTLGTPATVYG 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27534951 27536441 - BLOR04955 Blo12g00936 68197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00936 321 MobiDBLite consensus disorder prediction 50 67 - -
Blo12g00936 321 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 13 267 IPR044847 GO:0000976|GO:0006355|GO:0010158
Blo12g00936 321 Pfam Myb-like DNA-binding domain 153 204 IPR001005 -
Blo12g00936 321 SUPERFAMILY Homeodomain-like 149 206 IPR009057 -
Blo12g00936 321 MobiDBLite consensus disorder prediction 44 67 - -
Blo12g00936 321 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 152 205 IPR006447 GO:0003677
Blo12g00936 321 PANTHER TRANSCRIPTION FACTOR KAN4-RELATED 13 267 - -
Blo12g00936 321 Gene3D - 151 208 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo12g00936 Blo18g00828 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00936 Blo-Chr12:27534951 Blo18g00828 Blo-Chr18:24386123 5.19E-62 dispersed
Blo12g00936 Blo-Chr12:27534951 Blo18g00480 Blo-Chr18:5818249 6.32E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13070 PF00249 Myb_DNA-binding 2.20E-05 CL0123 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00936 - - pvy:116137755 268.855