Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00937 ATGGAAGAGAAAGCATCCGGATTAGTTTCATTAATGGGGCCAAGTGGCCACATTTGGCATGTTGACTTGACTCAGCAGGACGACGATTTATTTTTCAATCATGGATGGCCAGCATTTGTTAGAGATCATTTTTTAGATTGTGGAGACTTTCTTGTTTTCAGATACAATGGCGAGTTGCATTTCACTGTGCAACTCTTTGATCAAAGTGCATGTGAAAAGGAAGCTGCATTTCATTCTCAATGCAGTCAAGATCCCAGTGATGTTGGAAAATATGGGCGACTAAAAAGAATAAGGAAGGAAGCAGATTCATCTCCAGACACATTTACTGATGGCGTGGCAAAGAAAATGAGGAGTTTTTCTGAACTCCAACTGGGTTTTGAAGAAAGAAATCAGGAACTTAGAGATGTTCAGATGCACAATGGAGATATCCGGAATAGAGCCTGCAAAGAAGTAGACTTGGGAGATAATGTTTATATCTCACTATCTGCTCAGGATGAAAAGAAAGTAGCTCAGTCTTTTTCTTCTAATTTTCCATATTTTGTGAGAATAATGAAAACCTTCAATATCAGTGGTTCTTTTACTCTGAATATTCCTTATCAATTCTCGATGGCTCATCTACCAAACTGCAAAATAAAGATTGTCCTTCACAATTTGAAAGGGGAAAGTTGGACAGTGAATTCTGTGCCTTCTACGAGAGTGCATACTACACATACTCTCTGTGGGGGATGGTTAGCCTTTGTCCGTGGTAATGCCATCAAGGTGGGCGATGTGTGCATTTTTGAACTTGTTCGTGAGTGTGAATTACTTGTGCATATCCTTGGAGCTGGGAAAATATGGTCTGAGAGCCATAGTGGTAAAGATGCTCATAATAGTGCAGGTGCAGGTTTTGCAGTCAGTTCCCATAAAAATTTTAAAGGCAATCCTAAGAAAGCGATTGTAAAGTCATCCAACATTCAGTCTAAGAGCTCAAAAAAGGGTGAAAAATCTAGTAAAAAAGGTGTGAGGCCACGTAAAAATGTTTCCCTTTCAAGCAACATTCGGAAACGATGCAGTGATGCAAATTCTGTTTCAGTTTCCTCGCATACAAAGTTCTCCAATGAAAATATTGTCATTAGTGGAAGCAGTATCAAAGGTGATATGCATGGTTTCAGAATGATGTTGGCAATGGATGAAGAAAGAGCATATAAAGCATTCAATTCTTGTTTTCCTAGTTTTGTTAGAATCATGAAAAGGTTCAACATAAGTGGTTCACACACTTTGAAAGTTCCACACCAGTTTTCTACGGCCCATCTCCCCAACTCCAAAACTGAGATCGTGCTTCATAACTCGAAAGGTGAATGTTGGACAGTGAACTCTGTCCCAGACTCAATGGGGCGAATGGTGCATACATTTTGCGGTGGTTGGATGGCATTTGTTCGTGGCAACAACATCAATATTGGAGACATCTGCATTTTTGAACTCATCGACAAGTATGAAATGATTGTACATATATCTGGGTATGGCAAGAAAGAGCTTGGGTTTGGCAGTGGAGAAGCAATCTGCAATCCACTAGATATTGTACCATTAAACGCTAATCACGCTCCTGTATGA 1590 39.81 MEEKASGLVSLMGPSGHIWHVDLTQQDDDLFFNHGWPAFVRDHFLDCGDFLVFRYNGELHFTVQLFDQSACEKEAAFHSQCSQDPSDVGKYGRLKRIRKEADSSPDTFTDGVAKKMRSFSELQLGFEERNQELRDVQMHNGDIRNRACKEVDLGDNVYISLSAQDEKKVAQSFSSNFPYFVRIMKTFNISGSFTLNIPYQFSMAHLPNCKIKIVLHNLKGESWTVNSVPSTRVHTTHTLCGGWLAFVRGNAIKVGDVCIFELVRECELLVHILGAGKIWSESHSGKDAHNSAGAGFAVSSHKNFKGNPKKAIVKSSNIQSKSSKKGEKSSKKGVRPRKNVSLSSNIRKRCSDANSVSVSSHTKFSNENIVISGSSIKGDMHGFRMMLAMDEERAYKAFNSCFPSFVRIMKRFNISGSHTLKVPHQFSTAHLPNSKTEIVLHNSKGECWTVNSVPDSMGRMVHTFCGGWMAFVRGNNINIGDICIFELIDKYEMIVHISGYGKKELGFGSGEAICNPLDIVPLNANHAPV 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27538147 27541046 - BLOR04956 Blo12g00937 68198

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00937 529 CDD B3_DNA 403 497 IPR003340 GO:0003677
Blo12g00937 529 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 307 515 - -
Blo12g00937 529 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 1 282 - -
Blo12g00937 529 SUPERFAMILY DNA-binding pseudobarrel domain 398 499 IPR015300 -
Blo12g00937 529 MobiDBLite consensus disorder prediction 299 341 - -
Blo12g00937 529 ProSiteProfiles B3 DNA-binding domain profile. 405 501 IPR003340 GO:0003677
Blo12g00937 529 Pfam B3 DNA binding domain 4 68 IPR003340 GO:0003677
Blo12g00937 529 Pfam B3 DNA binding domain 180 273 IPR003340 GO:0003677
Blo12g00937 529 Pfam B3 DNA binding domain 405 496 IPR003340 GO:0003677
Blo12g00937 529 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 307 515 IPR044837 -
Blo12g00937 529 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 1 282 IPR044837 -
Blo12g00937 529 SUPERFAMILY DNA-binding pseudobarrel domain 173 275 IPR015300 -
Blo12g00937 529 ProSiteProfiles B3 DNA-binding domain profile. 180 276 IPR003340 GO:0003677
Blo12g00937 529 CDD B3_DNA 178 273 IPR003340 GO:0003677
Blo12g00937 529 SUPERFAMILY DNA-binding pseudobarrel domain 5 74 IPR015300 -
Blo12g00937 529 Gene3D - 1 71 IPR015300 -
Blo12g00937 529 SMART B3_2 405 501 IPR003340 GO:0003677
Blo12g00937 529 SMART B3_2 180 276 IPR003340 GO:0003677
Blo12g00937 529 ProSiteProfiles B3 DNA-binding domain profile. 1 69 IPR003340 GO:0003677
Blo12g00937 529 CDD B3_DNA 9 67 IPR003340 GO:0003677
Blo12g00937 529 Gene3D - 388 500 IPR015300 -
Blo12g00937 529 Gene3D - 162 275 IPR015300 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00937 - - - zju:107420328 566.229
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00937 Blo-Chr12:27538147 Blo05g00223 Blo-Chr5:2469055 1.93E-11 dispersed
Blo03g00571 Blo-Chr3:22536128 Blo12g00937 Blo-Chr12:27538147 3.53E-17 transposed
Blo05g00592 Blo-Chr5:15158815 Blo12g00937 Blo-Chr12:27538147 4.26E-18 transposed
Blo06g00247 Blo-Chr6:12599204 Blo12g00937 Blo-Chr12:27538147 5.62E-06 transposed
Blo12g00937 Blo-Chr12:27538147 Blo04g00496 Blo-Chr4:4134274 1.96E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g838 . Blo12g00937 . Bda03g00232 . Bpe04g00197 Bma04g00184 . . . Cma01g01876 Cma09g00197 Car01g01462 Car12g00479 . Cpe06g00134 Cpe07g00453 . . . . . . . . . . . . . . Cone4ag1546 Cone7ag1405 . . Lsi04g01605 Csa03g04152 Chy04g00568 . . . . . . . . . . Cmo01g01934 Cmo09g00192 Cma12g00508 . . Car09g00166 . Cpe02g00152 Bhi09g02026 . . . . . . Cla05g01994 Cam05g2144 Cec05g2160 Cco05g2207 Clacu05g2135 Cmu05g2008 Cre05g2133 . Csa02g02009 . Cme04g00679
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006500 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 0 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13071 PF02362 B3 2.00E-11 CL0405 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00937 Blo_Chr12 FPKM 0.51126 1.005036 4.439267 5.254868 15.620342 13.426573 15.488235 5.182887 5.627079 5.115082