Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00939 ATGATCGTCAGAAGTTGCAGAGAAATTGTTGCTCAGCCTCTCGACTATTTTCGAACCCAACTGGCTATTTTCCTCGGTATAAGACCACCCCACATTCCACCTCTTCTCCCTGACATTTTTAACGGCAGCCTTGGGCCTTTCCAAGACGAGGAAGCTTCTTTCATTGCTAGTCGTCAGCTTCTTACCTTCCACGAGAATGGTGATTTGCCAGATAATTTCGAGTTTACCGTTACCTTGAACGTAACATTTGAAAACAGCAGGCTTAGAAAAGCTTACATTGCTCTGCAAGAATGGAAGAAGGCCATTTTCTCTGACCCTTTTAACACTACTGGAAATTGGGTCGGAGCTGATGTTTGCTCTTACACAGGAGTTTTCTGCGCACCGGCTCTCGATGATCCTACTGTCACCGTCGTCGCCGGGATCGACATCAACCACGCTGACATAGCCGGCCACCTTCCGGTTGAGTTGGGTCTGTTGACCGATATCGCGTTGTTTCACATTAACACCAACAGGTTTTGTGGAGTTATTCCGAAAAGTTTCTACAGGCTTACGCTTCTTCACGAACTCGACGTCAGCAACAACCGTTTCGTCGGACCTTTTCCTACCGTTGTCCTCTCTGTTCCAAAACTCCATTATCTTGATTTGAGGTTCAATGACTTTGAGGGTGATTTGCCGCCGGAGCTTTTTGAGAAGGAGCTAGACGCCATTTTCTTGAACAACAACAGGTTCACATCTACCATTCCGGAGAACTTCGGAAACTCTCCGGCGTCCGTTGTTGTCGTTGCCAACAACCATCTGAAGGGTTGTATTCCAAACAGCATTGGTAAAATGAAGAACACTCTCGACGAGATAATATTCTTGAACAACAAGCTCGGAGGGTGCTTGCCATCGGAGATGGGATTGCTCGGAAACGTGACTGTTGTGAATATTGCGTCGAACTCATTCACCGGAATCTTGCCCAAGACATTTACAGCGCTTGAAAAGATTGAACAGTTGGACATTTCTCACAATGTGTTGACTGGCTTTGTCTCTGGGAGTCTCTGCAAATTGCCCGGATTGGTTAACTTCACATACTCTTACAACTTCTTCAATGGTGCAGCAGTCGAATGCACGCCCTCCTCGAAGAAGAGCATTGCGTTTGACGATACCATTAACTGCTTGCCGCAGAGGCCGAAGCAAAGAGGTGAGAAAATTTGCAGTGAAGTGGTAAACAAGCCGGTGGATTGTAGTAAAGCTAAGTGTGGAGGAGGAGGAGGAGGAGGTGAAGGAGCAGGAGCAGGAGGATCGCCGCCTTCTTCGCAGACTCCAAAGCCTCAGCCAACGCCGACTAACCCGCCTAAAGAACAGTCACCGGTTAGTCCACCGACGAAACCAGAATCACCAAAGTCACCACCAACGGAGAAGGAATCTCCAGTTCCTCAACCAGTTCCGTCGCCGTCAAGTCAATCGCCTATCCCAAGACCGTCGAGTCCGATTTCAAAGCCTCCAGCTCCCAAGCCGCAATTTCCACCGGGGTCTACAACACCAACGACTAGTCCAACTGCATCGCCTAATGACCCACATGATAAATCGCCAATTCCAGGGCGCAGATCTCCGCCACATGCATCATATACTCCGCCTCCAGTTCAATCTCCACCGCAACCAGTTCAATCTCCTTCACCACCAGTCTACTCTCCTCCCCCCTCCGTTCATTCTCCTCCAACGCCAGTGAAATCTACACCGCCACCGGTTCAATCTCCACCCCGACCAATTCAATCTCCTTCGCCACCAGTATACTCTCCTCCCCCATCCGTTCATTCTCCTCCAACTCCAGTGAAATCTCCACCGCCATCGGTTCAAACTCCACCAACACCAACTCAATCTCCTTCGCCACCGGTCTACGCTCCTTCCCCACCCGTTCATTCTCCTTCACCTCCGGTGAAATCTCCTCCTTCATCAACAGTTTATTCTTCTCCCCCTCCGGTGAAATCTCCTCCTTCATCACCAATATGGGGTCTTCGCATCTTGTTTGATCTTTTGATTTTAAGTTTTGAATCTGGGTTTTTCGTCTATGGTGGGAAAAACCTTGCTAGTGGGTTGCTGTTGAATTTAAAATGA 2097 48.78 MIVRSCREIVAQPLDYFRTQLAIFLGIRPPHIPPLLPDIFNGSLGPFQDEEASFIASRQLLTFHENGDLPDNFEFTVTLNVTFENSRLRKAYIALQEWKKAIFSDPFNTTGNWVGADVCSYTGVFCAPALDDPTVTVVAGIDINHADIAGHLPVELGLLTDIALFHINTNRFCGVIPKSFYRLTLLHELDVSNNRFVGPFPTVVLSVPKLHYLDLRFNDFEGDLPPELFEKELDAIFLNNNRFTSTIPENFGNSPASVVVVANNHLKGCIPNSIGKMKNTLDEIIFLNNKLGGCLPSEMGLLGNVTVVNIASNSFTGILPKTFTALEKIEQLDISHNVLTGFVSGSLCKLPGLVNFTYSYNFFNGAAVECTPSSKKSIAFDDTINCLPQRPKQRGEKICSEVVNKPVDCSKAKCGGGGGGGEGAGAGGSPPSSQTPKPQPTPTNPPKEQSPVSPPTKPESPKSPPTEKESPVPQPVPSPSSQSPIPRPSSPISKPPAPKPQFPPGSTTPTTSPTASPNDPHDKSPIPGRRSPPHASYTPPPVQSPPQPVQSPSPPVYSPPPSVHSPPTPVKSTPPPVQSPPRPIQSPSPPVYSPPPSVHSPPTPVKSPPPSVQTPPTPTQSPSPPVYAPSPPVHSPSPPVKSPPSSTVYSSPPPVKSPPSSPIWGLRILFDLLILSFESGFFVYGGKNLASGLLLNLK 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27545575 27554370 - BLOR04958 Blo12g00939 68200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00939 698 Pfam Leucine rich repeat N-terminal domain 94 126 IPR013210 -
Blo12g00939 698 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 48 602 - -
Blo12g00939 698 Gene3D Ribonuclease Inhibitor 91 386 IPR032675 -
Blo12g00939 698 MobiDBLite consensus disorder prediction 532 660 - -
Blo12g00939 698 Pfam Leucine rich repeat 304 355 IPR001611 GO:0005515
Blo12g00939 698 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 48 602 - -
Blo12g00939 698 SUPERFAMILY L domain-like 93 366 - -
Blo12g00939 698 MobiDBLite consensus disorder prediction 433 507 - -
Blo12g00939 698 MobiDBLite consensus disorder prediction 416 660 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00939 Blo-Chr12:27545575 Blo12g01092 Blo-Chr12:28596716 1.47E-116 dispersed
Blo08g00325 Blo-Chr8:4897155 Blo12g00939 Blo-Chr12:27545575 6.94E-100 transposed
Blo01g01542 Blo-Chr1:55024229 Blo12g00939 Blo-Chr12:27545575 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00939 - - twl:119999278 568.155