Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00943 ATGGAGGATGCGAGAATCCTCAGAATTGCGGAGTTGCTCCAACGAGGTCTTCCTCTCACAGGTGCATTTTATTGCCGTCGCTCTTCTCGCAGTCGTCCAATCTCTTCTATGCCATCTCGATCAAATGCAACTCCGTCTTTTCCAGACGATCCAGATTCTGACCCCAAATTTCTCACTCCTCTGATTGATCCCGCCATCATCGTCGGAATCCTTAGCCTACCGGATGGGGTGGTGACCTGTGCCTCCGATTCAAACCCTAGAAGTCGATGTCATTACAAGAGTTGCTTCCAATTTACTGATGGCTCCGGTGTTGTTTGCTGTGACATTCTCGACCTTGATATACGGATGATTGGAAAAGAAATTCGCGTTCTTTGTTGGAACTTTATTCCGTTGAGAGAGGGCGTGGGGCTCTTGGAAATTATCAATTGGAGTTTTCCAGATTCGAGCCCTGGGCATTCTAGTACGGATACATTTCCACTTAATATAGGTTCTTCATCTGGTTTAAAAGATCCTTCTAATGCTCGGTACTCTTTTTTCGGCGTCTTGGATTCAGTTAGTCCTGTTTCGACTGTGCCGTGTACATTCGTCCACTTGTTGACTGATAAGGACGCTTGTTCTTCTAGCGGTTCAGAAAAGCTTTGTGGTTTTTTAGTGCAAATTTTAGTTTGTAAATGTAGAGTCTGTACTTCTAAGGAGTCTGTGGTCATTCTACATCATGCAAATGGGGAGCATGATACTCATTCGTTTGTCACGCCTGAGTTTGTGTATTTTTGTGGGTTTGCATCTTCTTGGCATCCGGTATTTACCAAACTGGTTGGAAGATTTGCTAGGTTTTCGGGCTTTAAAAGGAAGAAGGTCTTTATTAGTAAGAAAGAGTCTAGTTTGATGTACGTGACTACGGCAAAATCTACTCTATCCTTGTCTAGCTTATCTAAGAAACGGCTAGACGGTAGAAAAATAGTCATTAAAGGAAAGGGAGAATGTGGTTCGTACTGTGGTATTATCAAGGGAGTGTACATGCAGGGAATGATTGTTGAGCTCGATGGTGGAGTTTGTCTTTTGTTAACTGATCAATCACTTGCTCCATCACATAGTCTAAGAGTGGGCTCTTTTATATCTGTAAAAAATGTTCATTTTGTAAATCCAAAATTTTCTTGGGGAAAAATTCTTGTGCTGGGGGCTTGCGTCAAGACTAGCATTTCTGTGGAGTCGTTTTCACCATTGGAAACTAGATGTCATGTCATATCACTGTCAACAAGCATGTTAGGAAAGTTTATTGGATCCTTACCCTTTTCTGAAAGATTATGGGCATTACTCATAGTTTCATCCTTCCGCAAAATGTTTGCTGGTATTTTATCTGATAAGGAGATTTTGGGGTCAAAGCATAAGGAGGGACTGGTTCAAATTTATGCTAGTTCACATATACCTTTTTCTGTTCTTCAATCTCAGCATGGAGTGTTGATGGAATTTAATAAGCACAGGTCATGTCTGTGTGGTAGTGAACCTTGCGGCTCTTATCTTAAATCTGTGATACCTGTTTCTAGCTTCATTTCTTTTTGTGAGATTAAATGGACTGGAGAAATGCAATTAAAATATGGCAGCGGAAGGGAAGGTGAGTACAACCAGACAATTAGGAAGACCTATCAGAGTGAAGATTTAGGCTTTACCTTGGTTGGTTCATTGAAGATTTCTCCATATTCTGGAAGATTACAGTTGGTTGATGCAACTGGAGGTATTGATATTGTTGTACCCGACCTTCCGTCAAATTTGAATGTGAACAGCATCTTTGAGGTTACCAAATATAGTCTTGTCATGGAAGGCAAACCACAATTGGTGGATGGTTCAGGATTGGTTAACGTTAAGGTATTCTCATGCAGAAATTTATTCCATTGTATCTCATCAGCGAAAAATCTCAAGGTAGCAGTTTATGTTCACTTTCATTGTAAAGACGCAACTTGCAGAAGTTTGCCCTTATATTTGGGAGTTGAATGGAAGGGTGGGTTTGATATACCTGAAAGAGGAAGATATCTTCTTCTTCAGATAACACATAAATTTCCTCTGGCACAAAACTTTCAAGGTAGTTTGATGAAATCAGTCAAGTCAAGCTTGTTTATTGAAGTTGTAATCTTTTCTTGGAATTTAATTCTTGGAAAAGATGATTTAACTGACTTTTCAAGGGAGCAGCTAATCGAAAATCCTATCACAGATAATTGTGAGGACAATACTAACAAGAGATGCAAATTTGCAGCCAATGGAAAGAGTTCAGACTCAACGTATGATTTTGATGATTATGGATGTGGATTTGATGTATCCAGGAAATGCCAAAAATTCTGCAATTTGAATAATCATAAAATATCTTGCTTTGCCACAGTTAGGGGTTTTAAAGGCGACCAGGGTATCTCAGGTTTCTTGATTCACAAACAAGATAATATAAGTACCTATGGGTGCATGCCAAGTGCTCGAAGGGTGCTGCTAGAGTTCAAGCCTGATAGTTTTTTCAGTTACCAGATTGTTGTTGCCGAACTGCAGTCCCTGCAGATTGGTAATCATTACATCTTGAAGTATCATAAAGAAGATTCTTTGTCTAACTTAGAGGACTCTGCACGTGGCAGCAGTCTGAAGTTTCTTATGAATTCCCACATGCATCTATGGGAAATTTTATTCGCTACTGATTGGGGTCTCCATAATAGTATACCATTCCAATCTACTTGGAATGATATTTCTTTTGGCAGCACTGAAGTTTTATCAAAAGTTCAGATGAAATTATGCCCAAGAACTTCAGTTGTTTGTCTACATTTTTCTGCTAATATAAGAAGCCTTTTGGACACGAATATTCAGGATCTAGAAGTATCGTCAAAGAGAGTTTTAAAATCCGAAGAGATTAACTATGATTCTCAATGCCATGGGTCTGGGTGCCTGTTTCCTGAGGGAAACCTATTGTCACTGGACGGGCATGTAGTTGCAGTACATGATGTGACTTTTAGTTCTACTTATGCAGATTTTAATTGCCCAGACCTTATTGATGAAAAGTTGACCAGATTCGTTCAACAACGAAGATGCAATTCTTGCATTCATCTTTCAGTCGACAATTGCATTGTAAGGATTATTGGTTCAACATACCTTTTTCCTATTGGTTTCGGACCTGGCATAAGTGCATCGTTCCATAGAATTCTAGATCTCAGGGGGGGCAAAAATTTGCTGTTGACTCCAGTATCGTACATTGTAATCAATCATAGTGCAATTTCTATTGAGCCAAACATCGATGTTAGAGCATCCAACAAGCCAGACATTGTTATCAAAGAAGCTAATGAGCCAAAGTATGACAAAATTAAATCTGATATGGGCAATAAATTATCTAATAGCCCAGTTTCTTTGGGACTAGTATCTGAATTGTTTCGTAGCTCAAATGCAAACTTCCAACTAATTAAACTAAATTGCAGGGTTGTTGCTGTCAGTGTCTTGGTATTGGAGAAAAAAAGGAATTATGTTATTCCTCCTCTTGCAAGAATTGCTGCCAAGCCTCCTTTTCACGTTCCTCTTGCTGCTTTCATTCTAGATGATGGATCATCCACATGTTGTTGCTGGAGTAGCGGTGAAAGGGCAGAAACATTTCTAAGGCTGCATGAACTCCTCCCAAGGAGAACTTTTGGAAGCAGTGGCTGGGTCCTTGATAGGGTTGGAATGGGTCACAAATCCTGCACAACAGCCAGTGATCTTCTTGGCAGATTATTAAGAAACCATGATAGAATTGTTGTTAAAAGTTTTGGATCGATGTTAGGTTCATCCAATCAAGACATGGATGTTTGTGTTGGTTCAGATTCTGCCCTCAGCATTGCAGATGAAAGCCTCATCAAGTTCATAATCTTAAATGTCTGCCATGGCACCCTTTGGACTGTCCTTGCCAGTTGGATGGATACTGATGCAATACCAAGTTTGATGGAAGAACACAATATTCAAATGGAGAGGACTCAGTCTGTGCAATCTATATGGGCCAGAGAAGTCAGTTGCACTAATAGTCTTGTTGAAGCAAGAAATATCATGGTGGAATTGATAGAGAGACTCTGCTCAGCTATCATGGGCTACGGTGACTTTGATGTTGAGAGCTGGGTAGAGGCCAAATGTTCCACCTGCATTGATGGAAGAATAGCTGCTCATCCACCGCCTCCACCTCCACCTCCACCTCCACCTCCACCACCTGCTGTTAATCCTCAAACCCATCGTGAAATTGGTCAGGCCGCCACCATTGTTGTAGGAGGCTCTCAAGGTTGGCGTTCTGGCTATAACTACACCCAATGGGCTCTTCAAAACAAGCCATTTTACTACGGTGACACATTTGTATTCAAGTACGAGTCGCCAAGTAGAGACGGAGGTCACAGTGTTTACCTGCTGCCAAGTTTATGGAGTTACTTAACCTGTGATTTCAGGAGAGCAAAAATGGTGGCGAATCCCATGCAAGGAAGGGGGAAGGGTTTTTCAATAGTTTTAAATCAATGGAGACCTTACTACTTCGCCAGTGGCGAAGATAATGGAAATGACTGCGCCAATGGCCTCACCAAGTTTATTGCCATCCCATGGCCTCGCTTCCAGTTCTGA 4593 40.89 MEDARILRIAELLQRGLPLTGAFYCRRSSRSRPISSMPSRSNATPSFPDDPDSDPKFLTPLIDPAIIVGILSLPDGVVTCASDSNPRSRCHYKSCFQFTDGSGVVCCDILDLDIRMIGKEIRVLCWNFIPLREGVGLLEIINWSFPDSSPGHSSTDTFPLNIGSSSGLKDPSNARYSFFGVLDSVSPVSTVPCTFVHLLTDKDACSSSGSEKLCGFLVQILVCKCRVCTSKESVVILHHANGEHDTHSFVTPEFVYFCGFASSWHPVFTKLVGRFARFSGFKRKKVFISKKESSLMYVTTAKSTLSLSSLSKKRLDGRKIVIKGKGECGSYCGIIKGVYMQGMIVELDGGVCLLLTDQSLAPSHSLRVGSFISVKNVHFVNPKFSWGKILVLGACVKTSISVESFSPLETRCHVISLSTSMLGKFIGSLPFSERLWALLIVSSFRKMFAGILSDKEILGSKHKEGLVQIYASSHIPFSVLQSQHGVLMEFNKHRSCLCGSEPCGSYLKSVIPVSSFISFCEIKWTGEMQLKYGSGREGEYNQTIRKTYQSEDLGFTLVGSLKISPYSGRLQLVDATGGIDIVVPDLPSNLNVNSIFEVTKYSLVMEGKPQLVDGSGLVNVKVFSCRNLFHCISSAKNLKVAVYVHFHCKDATCRSLPLYLGVEWKGGFDIPERGRYLLLQITHKFPLAQNFQGSLMKSVKSSLFIEVVIFSWNLILGKDDLTDFSREQLIENPITDNCEDNTNKRCKFAANGKSSDSTYDFDDYGCGFDVSRKCQKFCNLNNHKISCFATVRGFKGDQGISGFLIHKQDNISTYGCMPSARRVLLEFKPDSFFSYQIVVAELQSLQIGNHYILKYHKEDSLSNLEDSARGSSLKFLMNSHMHLWEILFATDWGLHNSIPFQSTWNDISFGSTEVLSKVQMKLCPRTSVVCLHFSANIRSLLDTNIQDLEVSSKRVLKSEEINYDSQCHGSGCLFPEGNLLSLDGHVVAVHDVTFSSTYADFNCPDLIDEKLTRFVQQRRCNSCIHLSVDNCIVRIIGSTYLFPIGFGPGISASFHRILDLRGGKNLLLTPVSYIVINHSAISIEPNIDVRASNKPDIVIKEANEPKYDKIKSDMGNKLSNSPVSLGLVSELFRSSNANFQLIKLNCRVVAVSVLVLEKKRNYVIPPLARIAAKPPFHVPLAAFILDDGSSTCCCWSSGERAETFLRLHELLPRRTFGSSGWVLDRVGMGHKSCTTASDLLGRLLRNHDRIVVKSFGSMLGSSNQDMDVCVGSDSALSIADESLIKFIILNVCHGTLWTVLASWMDTDAIPSLMEEHNIQMERTQSVQSIWAREVSCTNSLVEARNIMVELIERLCSAIMGYGDFDVESWVEAKCSTCIDGRIAAHPPPPPPPPPPPPPPAVNPQTHREIGQAATIVVGGSQGWRSGYNYTQWALQNKPFYYGDTFVFKYESPSRDGGHSVYLLPSLWSYLTCDFRRAKMVANPMQGRGKGFSIVLNQWRPYYFASGEDNGNDCANGLTKFIAIPWPRFQF 1530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27568110 27583596 + BLOR04962 Blo12g00943 68204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00943 1530 MobiDBLite consensus disorder prediction 30 51 - -
Blo12g00943 1530 SUPERFAMILY Cupredoxins 1412 1521 IPR008972 -
Blo12g00943 1530 ProSiteProfiles Post-SET domain profile. 492 508 IPR003616 -
Blo12g00943 1530 PANTHER CST COMPLEX SUBUNIT CTC1 1 1349 IPR042617 -
Blo12g00943 1530 MobiDBLite consensus disorder prediction 30 48 - -
Blo12g00943 1530 ProSiteProfiles Phytocyanin domain profile. 1413 1526 IPR003245 GO:0009055
Blo12g00943 1530 MobiDBLite consensus disorder prediction 1383 1403 - -
Blo12g00943 1530 Pfam CST, telomere maintenance, complex subunit CTC1 61 370 IPR028262 GO:0000723
Blo12g00943 1530 Gene3D - 1411 1524 IPR008972 -
Blo12g00943 1530 MobiDBLite consensus disorder prediction 1381 1405 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00943 - - - cmax:111476801 1089.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00943 Blo-Chr12:27568110 Blo13g00568 Blo-Chr13:27789883 7.82E-06 dispersed
Blo12g00943 Blo-Chr12:27568110 Blo18g00831 Blo-Chr18:24504838 1.99E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g824 . Blo12g00943 . . . . . . . . . Cma09g00208 . . . Cpe06g00142 . . . . . . . . . . . . . . . . . . . . Csa04g02376 . . . . . . . . . . Sed01g2640 . . . . . . . . Bhi09g03368 Tan01g4831 Cmetu07g1013 . . . . Cla05g02003 Cam05g2154 Cec05g2172 Cco05g2219 Clacu05g2146 Cmu05g2016 Cre05g2142 . . Chy07g00105 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005908 1 9 1 1 0 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 4 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00943 Blo_Chr12 FPKM 27.929422 33.758339 8.728798 6.398943 20.561537 18.55345 20.147434 9.282018 10.203035 13.269468