Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00945 ATGCAGTCGGACGGTTCTGATGCGCAGACGGCGCAGCAGTCGGAGCAGAATCAGCGGCAACAATCGCAGCCACCGCCACAGCAGTGGATGGCCATGCAGTATCCGGCGGCAGCGATGGTAATGCCGCACCAGATGATGCGTCATCAGCATTACGTTCCGTCCATACCGCCGCATTATGTGCCGTACCATCAGTTTCAGCCTTACCATCCGCTAATGCAACAAGGTCAGCAGCATCACCAAGGTTCTCCCGGTGAGAACAAGACGCTATGGGTCGGCGATTTGCACCATTGGATGGACGAGAATTATCTCCATTCATGCTTCGCTTCTACTGGCGAGATTTCTTCCATTAAGGTTATTCGAAATAAACAGACTGGTTTATCTGAAGGCTATGGATTTGTGGAATTTTTGTCCCTCGCAACAGCTGAGAAAGTTTTGCAGAACTACAGTGGCATCTTTATGCCAACTACAGAACAACCTTTTCGCCTTAACTGGGCGACATTTAGCTCAGGAGAAAAGCGTTCAGATAATGGCCCTGATCTTTCTATTTTTGTAGGAGATTTAGCAGCAGATGTTAATGACAGTTTGTTGCTTGAAACTTTTGCTAGTAGATTTCCATCAGCTAAGGCAGCAAAAGTTGTTTTTGATGCCAACACTGGTCGTTCGAAGGGTTACGGTTTTGTGAGGTTTGGAGATGATAATGAGAGGTCACAGGCCATGACAGAGATGAATGGTGCTTATTGTTCGAGCAGGCCCATGCGCATTGGTGCAGCAACGCCAAGGAAATCTTCTGGATACTCACATCAATTTTCCTGGCAAGGAGGATATGGATCAAATAGTTCCTTTACCCAGGGTCTTCAATCTGACGCTGATTCAACAAACACAACAATATTTGTTGGAGGGCTTGATCCTAATGTCAGCGATGAAGATCTTAGGCAGCCTTTCTCTCAGTATGGGGAGATAGTTTCTGTTAAAATACCAGTCGGAAAAGGATGTGGGTTCGTGCAATTCGCCAGCAGAAACAATGCCGAGGAGGCTTTACAGAAACTAAATGGTACCGAAATTGGCAAGCAAACCGTGCGTCTTTCTTGGGGTCGAAACCCAGCAAATAAGCAGCAGGAATTTGGCAATCAGTGGAATGGACCATACTATGGAGGGCAGGTTTATGATGGATATGGATACGCCATGGCTTCCCCTCGCGATCCGGGCATGTATGCTGCATCTGCTGCAATGTATGGAGGTTACCCCTTCTATGGAACCACCCATCAAGAGCAAAAAACAGGAAGAAGGGACACGTTGCTTCATGATGATGCAGCACGTTGGTACGTGATCTCGGAGATGCAGCACTGCGTTCTACATTGCAATTCGAAGATGAACAGTAGAGGGAGGGCTAGGCTGCAGACCCTGAAATCTTCCAAGAATGAAGAGGATAGTGTGGAGATTCTGGAGACTAAGTTAAGGGATAGTGCTGCTAAAGAAACTTCGAGTGGACGAGTTTCCAGGAGAGAGAGAAAAAAAGCTCTGCAGAAAGACATTGATAAGCTAAAGAAGAAGCTGATACAGGAAGAGAACATACAGAGAGCTTTGAAGAGGGCTTCCACAAGACCCTTGGGGGCTTTTCCTCGTCTCCCTCCTTTCCTCCCTCCATATACGATAGAGCTTATTGCAGAAGTAGCTGTGTTGGAGGAGGAGATTGTTCGACTTGAACAACAGCTTGTTCATTTTAGGAAAAGCTTGGACGAGGAAGCTGTAAACTTGTCATCTTCAAAGAAGGTCAAAGAAAATTTATCTGGTTTATACGATCCCAAGCTTTTAGCTCAAAACTCGGCAAGTTCCCCCACAAATTCGCCATCTGTGTCTGGTTTGTTTCTTCATTGA 1875 46.4 MQSDGSDAQTAQQSEQNQRQQSQPPPQQWMAMQYPAAAMVMPHQMMRHQHYVPSIPPHYVPYHQFQPYHPLMQQGQQHHQGSPGENKTLWVGDLHHWMDENYLHSCFASTGEISSIKVIRNKQTGLSEGYGFVEFLSLATAEKVLQNYSGIFMPTTEQPFRLNWATFSSGEKRSDNGPDLSIFVGDLAADVNDSLLLETFASRFPSAKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGAYCSSRPMRIGAATPRKSSGYSHQFSWQGGYGSNSSFTQGLQSDADSTNTTIFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFASRNNAEEALQKLNGTEIGKQTVRLSWGRNPANKQQEFGNQWNGPYYGGQVYDGYGYAMASPRDPGMYAASAAMYGGYPFYGTTHQEQKTGRRDTLLHDDAARWYVISEMQHCVLHCNSKMNSRGRARLQTLKSSKNEEDSVEILETKLRDSAAKETSSGRVSRRERKKALQKDIDKLKKKLIQEENIQRALKRASTRPLGAFPRLPPFLPPYTIELIAEVAVLEEEIVRLEQQLVHFRKSLDEEAVNLSSSKKVKENLSGLYDPKLLAQNSASSPTNSPSVSGLFLH 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27591699 27599635 - BLOR04964 Blo12g00945 68206

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00945 624 CDD RRM2_SECp43_like 179 258 - -
Blo12g00945 624 SMART rrm1_1 295 362 IPR000504 GO:0003723
Blo12g00945 624 SMART rrm1_1 181 255 IPR000504 GO:0003723
Blo12g00945 624 SMART rrm1_1 88 163 IPR000504 GO:0003723
Blo12g00945 624 CDD RRM3_NGR1_NAM8_like 293 364 - -
Blo12g00945 624 SUPERFAMILY RNA-binding domain, RBD 167 279 IPR035979 GO:0003676
Blo12g00945 624 CDD RRM1_SECp43_like 88 168 - -
Blo12g00945 624 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 180 259 IPR000504 GO:0003723
Blo12g00945 624 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 182 252 IPR000504 GO:0003723
Blo12g00945 624 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 359 IPR000504 GO:0003723
Blo12g00945 624 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 154 IPR000504 GO:0003723
Blo12g00945 624 SUPERFAMILY RNA-binding domain, RBD 284 385 IPR035979 GO:0003676
Blo12g00945 624 Pfam Leucine-zipper of ternary complex factor MIP1 500 580 IPR025757 -
Blo12g00945 624 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 22 423 - -
Blo12g00945 624 MobiDBLite consensus disorder prediction 605 624 - -
Blo12g00945 624 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 22 423 - -
Blo12g00945 624 SUPERFAMILY RNA-binding domain, RBD 56 168 IPR035979 GO:0003676
Blo12g00945 624 Gene3D - 179 255 IPR012677 -
Blo12g00945 624 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 366 IPR000504 GO:0003723
Blo12g00945 624 Coils Coil 550 577 - -
Blo12g00945 624 Coils Coil 497 531 - -
Blo12g00945 624 MobiDBLite consensus disorder prediction 1 27 - -
Blo12g00945 624 Gene3D - 277 400 IPR012677 -
Blo12g00945 624 Gene3D - 86 166 IPR012677 -
Blo12g00945 624 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 167 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00945 - - - cit:102622145 645.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00945 Blo-Chr12:27591699 Blo15g00732 Blo-Chr15:24275487 2.39E-09 dispersed
Blo14g00101 Blo-Chr14:709696 Blo12g00945 Blo-Chr12:27591699 8.49E-12 dispersed
Blo15g00404 Blo-Chr15:5763494 Blo12g00945 Blo-Chr12:27591699 2.09E-07 dispersed
Blo01g01013 Blo-Chr1:30772712 Blo12g00945 Blo-Chr12:27591699 1.25E-131 transposed
Blo14g00281 Blo-Chr14:2796067 Blo12g00945 Blo-Chr12:27591699 4.37E-131 transposed
Blo01g01536 Blo-Chr1:54951740 Blo12g00945 Blo-Chr12:27591699 2.57E-40 wgd
Blo12g00945 Blo-Chr12:27591699 Blo04g01042 Blo-Chr4:14395789 1.06E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g817 . Blo12g00945 . Bda03g00225 Bpe02g00421 Bpe04g00192 . . . . Cma01g01862 Cma09g00212 Car01g01450 . . Cpe06g00146 . . . . . . . . . . . . . . . Cone4ag1558 . . . Lsi04g01584 Csa04g02384 . . . . . . . . . . Sed01g2644 Cmo01g01920 . . . . Car09g00179 . Cpe02g00164 Bhi09g03359 Tan01g4825 Cmetu07g0443 . . . . Cla05g02010 Cam05g2163 Cec05g2179 Cco05g2227 Clacu05g2155 Cmu05g2023 Cre05g2150 . . Chy07g00111 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00945 Blo_Chr12 FPKM 3.731183 4.343781 3.337222 6.00472 6.359008 6.053799 6.365958 4.589126 4.884144 4.998357