Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00951 ATGAAGATTCTGGTAACCGGCGCGTCTGGTTATTTAGGCGGGAGACTGTGTTGTGCTCTTCTGAATCAGGGATATTCTGTCCGGGCTTTGGTTCGTCCGACCAGCGATATTTCCTCTCTTCCTTCGTCTGACACTCTCGATTTGGCTTACGGCGATGTCAGCGACTACACTTCTCTCCTCAATGCCTTCTCAGGCTGCCAAGTTATCTTCCACGTCGCCGCGCTAGTCGAGCCATGGCTTCCTGATCCTTCCAAACTTTTCTCGGTCAACGTAGGAGGGTTGAGGAATGTGTTAGAAGCTGTGAGAGAGACCAAGACGATAGAAAAGATCGTATACACATCTTCCTTTTTCGCTCTTGGTCCAACTGATGGATACGTTGTTGATGAGCAACAGGTCCATCATGAGAAGTTCTTTTGTACAGAGTATGAGAAATCGAAGGTCATGGCTGATAAGATAGCTCTACAAGCTGCTTCTGAGGGTATTCCATTAGTGCCTGTTTATCCTGGAGTCATCTATGGTGTTGGAAAGGTTACAAGTGGAAATGTTGTTGCTAAGATGTTAATTGAACGCTTCAATGGGCGTTTACCTGGTTATATCGGCAACGGAAGTGATGTGTATTCTTTTAGTTACGTAGAAGATGTGGTTGAAGGGCATATTGCTGCAATGAACAATGGTCATCCTGGTGAAAGATATTTACTAACCGGAGAAAATGCATCATTCACAAAAGTTTTTGACATGGCTGCAATTCTTACGGGGACTAGAAAACCTTTGTTTAACATTCCATTATGGGTGATCGGAGTATATGGATGGATTTCTATTACTTTCTCTCGAATTACAGGGAATCTTCCTTTCATCAGCCCACCGACCGTGTATGTTCTAAGGCATCAATGGGCATATTCCTGTGAGAAGGCCAAGCTAGAGCTTGGTTACAAACCTAGAAGCTTAAAAGAAGGACTGTCGGAGGTGAAGAAGCCGCTTATAATGGAGAAACAACGGGTGCTGGTAAGGAGATCAAGTCGCGTAGCGAAAAGTCCAGCTCCTGTTTATGCAGAAGTTCGTGTTGATCGTTTATCAATACCTAGAAGGATTTCTAAGAGCAGGGATTTTTCAGATCGAGTATATGCTTCGACTCCGGCAAGGGAGGAAGCTATTGAAAAAGCTGAACAGCTGAAATCTGAATTAGACCCCCAATTTCCCTCCTTTGTTAAGCCAATGCTTCCATCCCATGTCGGCGGGTGTTTTTGGCTGGGCCTTCCAGCTCAATTCTTCAAAATGTACCTTTCAAAACAGGATGGGGTTATGACTTTGATAGACGAAGAGGGAGGAGAATCTCAGACAATATACTTAGCCAGAAAGATTGGACTCAGTGGTGGATGGAAGGGGTTTTCAGTTGATCATGGGTTGGCTGATGGAGATGCTTTAGTTTTTCAATTAATTAAACCCACAGCTTTTAAGGTGTACATAGTTAGAGTGAATAGTTCTGAAGAAGGTCACAAGCTCTAA 1503 43.98 MKILVTGASGYLGGRLCCALLNQGYSVRALVRPTSDISSLPSSDTLDLAYGDVSDYTSLLNAFSGCQVIFHVAALVEPWLPDPSKLFSVNVGGLRNVLEAVRETKTIEKIVYTSSFFALGPTDGYVVDEQQVHHEKFFCTEYEKSKVMADKIALQAASEGIPLVPVYPGVIYGVGKVTSGNVVAKMLIERFNGRLPGYIGNGSDVYSFSYVEDVVEGHIAAMNNGHPGERYLLTGENASFTKVFDMAAILTGTRKPLFNIPLWVIGVYGWISITFSRITGNLPFISPPTVYVLRHQWAYSCEKAKLELGYKPRSLKEGLSEVKKPLIMEKQRVLVRRSSRVAKSPAPVYAEVRVDRLSIPRRISKSRDFSDRVYASTPAREEAIEKAEQLKSELDPQFPSFVKPMLPSHVGGCFWLGLPAQFFKMYLSKQDGVMTLIDEEGGESQTIYLARKIGLSGGWKGFSVDHGLADGDALVFQLIKPTAFKVYIVRVNSSEEGHKL 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27639676 27644332 + BLOR04970 Blo12g00951 68212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00951 500 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 3 322 - -
Blo12g00951 500 SUPERFAMILY DNA-binding pseudobarrel domain 394 492 IPR015300 -
Blo12g00951 500 SMART B3_2 401 492 IPR003340 GO:0003677
Blo12g00951 500 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 322 IPR036291 -
Blo12g00951 500 CDD B3_DNA 399 490 IPR003340 GO:0003677
Blo12g00951 500 Gene3D - 377 493 IPR015300 -
Blo12g00951 500 CDD AR_FR_like_1_SDR_e 3 321 - -
Blo12g00951 500 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 3 322 - -
Blo12g00951 500 ProSiteProfiles B3 DNA-binding domain profile. 401 492 IPR003340 GO:0003677
Blo12g00951 500 Gene3D - 1 327 - -
Blo12g00951 500 Pfam NAD dependent epimerase/dehydratase family 3 231 IPR001509 -
Blo12g00951 500 Pfam B3 DNA binding domain 401 490 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00951 Blo-Chr12:27639676 Blo19g00278 Blo-Chr19:16628528 3.21E-19 dispersed
Blo12g00951 Blo-Chr12:27639676 Blo12g00952 Blo-Chr12:27647877 4.34E-118 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13072 PF01370 Epimerase 2.50E-28 CL0063 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00951 K15891 - zju:107420927 513.457