Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00952 ATGTACTGCCCATTCGCAGTTGATCAGTCTCTTCTCAGAAGCATTCAAATCTCTGAATGTAAAAGGAAAAAAGGGTTTCTTTTTTTCTTTTCTTCTCCTCGTTTGCTTTCTGAGAAAATGGTGGTGGGTAATGAATCATATGAAGAATGCCGCCGAAAGAGGGTGGAGGAGAATAAGAGAAGAATGGAAGCCCTCAACCTACCCCGCCTCTCTCTGACTTTTCGAAATCGCAAAGCTTCTTCTTTTAAGCCCTCCCCAGTGAAGAAGCCGCTTATAATGGAGAAACAACGGGTGCTGGTAAGGAGATCAAGTCGCGTAGCGAAAAGTCCAGCTCCTGTTTATGCAGAAGTTCTTGTTGATCGTCTATCAATACCTAGAAGGATTTCAAAGAGCAGGGATTTTTCAGATCGAGTATATGCTTCGACTCCGGCAAGGGAGGAAGCTATTGACAAAGCTGAACAGCTGAAATCTGAATTAGACCCCCAATTTCCCACCTTTGTTAGGCCAATGCTTCCATCCCATGTCAGCGGGGGTTTTTGGCTGGGCCTTCCAGCTCAATTCTGCAAAATGTACCTTTCAAAACAGGATGGGGTTATGACTTTGATAGACGAAGAGGGAGGAGAATCTCAGACAATATACTTAGCCAGAAAGACTGGACTCAGTGGTGGATGGAAGGGGTTTTCAGTTGATCATGGGTTGGTTGATGGAGACGCTTTAGTTTTTCAATTAATTAAACCCACAGCTTTTAAGGTGTACGTAGTTAGAGTGAATAGTTCTGAAGAAGGTCACAAGCTCTAA 798 43.73 MYCPFAVDQSLLRSIQISECKRKKGFLFFFSSPRLLSEKMVVGNESYEECRRKRVEENKRRMEALNLPRLSLTFRNRKASSFKPSPVKKPLIMEKQRVLVRRSSRVAKSPAPVYAEVLVDRLSIPRRISKSRDFSDRVYASTPAREEAIDKAEQLKSELDPQFPTFVRPMLPSHVSGGFWLGLPAQFCKMYLSKQDGVMTLIDEEGGESQTIYLARKTGLSGGWKGFSVDHGLVDGDALVFQLIKPTAFKVYVVRVNSSEEGHKL 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27647877 27649190 + BLOR04971 Blo12g00952 68213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00952 265 SUPERFAMILY DNA-binding pseudobarrel domain 159 257 IPR015300 -
Blo12g00952 265 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 40 261 IPR044837 -
Blo12g00952 265 ProSiteProfiles B3 DNA-binding domain profile. 166 257 IPR003340 GO:0003677
Blo12g00952 265 Pfam B3 DNA binding domain 166 254 IPR003340 GO:0003677
Blo12g00952 265 SMART B3_2 166 257 IPR003340 GO:0003677
Blo12g00952 265 CDD B3_DNA 164 255 IPR003340 GO:0003677
Blo12g00952 265 Gene3D - 142 258 IPR015300 -
Blo12g00952 265 PANTHER B3 DOMAIN-CONTAINING PROTEIN 40 261 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00247 Blo-Chr6:12599204 Blo12g00952 Blo-Chr12:27647877 6.22E-38 dispersed
Blo12g00952 Blo-Chr12:27647877 Blo04g00496 Blo-Chr4:4134274 9.97E-06 dispersed
Blo12g00951 Blo-Chr12:27639676 Blo12g00952 Blo-Chr12:27647877 4.34E-118 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13073 PF02362 B3 1.30E-12 CL0405 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00952 - - zju:107420903 295.819