Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00953 ATGTCCACAAGGGGTGAGCATCATACCGTCCCTCTCTCAGTTTTGCTTAGACGTGAATTGGCTAGTGAGAAGATCGAGAGACCAGAAATTCTACACGGCCAGGCTGGTCAGAGTAAAAAAGGGGAAGATTATACGTTGCTAAAGTCAGAATGTGAGAGAGTGGTTGGCGATGGAGTCTCTACTTATTCTGTTTTCGGGCTATTTGACGGACACAATGGGTCTGGAGCTGCTATTTACTCCAAGGAAAATCTCTTTAACAACATTCTTGCTGCTATTCCTTCTGATCTCAACAGAGATGAGTGGGTTGCGGCATTACCTAGGGCTTTAGTTGCAGGCTTTGTAAAAACAGATAAAGATTTTCAGGAGAAAGCACGAACATCTGGGACCACTGTCACTTTTGTGATTATAGAAGGATGGGTCATAACTGTTGCATCTGTTGGGGATTCTCGTTGCCTTCTTGAACCTGCTGAAGGTGGTATATATTATTTGTCAGCAGACCATAGACTTGAAAGTAATGAAGAAGAGAGGGACCGTATCATTGCTAGTGGAGGTGAGGTAGGTCGGCTCAATACTGGTGGTGGTGCAGAGATTGGCCCTTTGAGGTGTTGGCCTGGCGGTTTATGCCTTTCACGGTCTATTGGTGATATGGATGTTGGTGAATACATTGTTCCAGTGCCATATGTGAAGCAAGTGAAGCTGTCTACTGCTGGTGGTAGGGTCATTCTCTCAAGTGATGGTGTTTGGGATTCTTTGTCAGCAGAAATGGCTTTTGATTGCTGTCGTGGACTTCCTGCAGAAGCTGCTGCTGCGCAAATAGTCAAGGAAGCTTTACAAGCTAAGGGACTTCGAGATGATACTACATGCATTGTCATTGACATAGTATCTCATGATAAACTAGCTCCTCCTTTACCACCAACAAAGAAGCCAGTTAAAGGAGTATTTAAATCCATGTTCCGCAAAAAGCCTTCCGAATCATCATCTAATGTTGACAAAGAATATATTGAGCCTGATATAGTCGAGGAATTGTTTGAGGAAGGGTCTGCTATGCTATCAGAGAGGTTAGACACGAAATATCCTCTCTGCAACATGTTCAAGTTGTTTATGTGTGCAGTTTGCCAAGTAGAGATCAAACCTAGAGAGGGTATTTCAATACATGCTGGCACATCTAAGAGAGGAAAAATGCGTCCTTGGGATGGCCCTTTCCTATGCATGAGTTGCCAGGAGAAAAAAGAAGCCATGGAAGGAAAGAGACCATCAGGAGGTGTTTCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATCCGACATGCATATAGGTTAGGCTTTGTAGCATCCAAAACAAATGAGTCCAGTAGCAATCCAAATACACAATTTCAGAATACAGATGACATAGAAACAATCTTCAGAGAAAATGATGGTATTCTATGA 1455 42.47 MSTRGEHHTVPLSVLLRRELASEKIERPEILHGQAGQSKKGEDYTLLKSECERVVGDGVSTYSVFGLFDGHNGSGAAIYSKENLFNNILAAIPSDLNRDEWVAALPRALVAGFVKTDKDFQEKARTSGTTVTFVIIEGWVITVASVGDSRCLLEPAEGGIYYLSADHRLESNEEERDRIIASGGEVGRLNTGGGAEIGPLRCWPGGLCLSRSIGDMDVGEYIVPVPYVKQVKLSTAGGRVILSSDGVWDSLSAEMAFDCCRGLPAEAAAAQIVKEALQAKGLRDDTTCIVIDIVSHDKLAPPLPPTKKPVKGVFKSMFRKKPSESSSNVDKEYIEPDIVEELFEEGSAMLSERLDTKYPLCNMFKLFMCAVCQVEIKPREGISIHAGTSKRGKMRPWDGPFLCMSCQEKKEAMEGKRPSGGVSSLSLSLSLSLYIYIYIYIYIRHAYRLGFVASKTNESSSNPNTQFQNTDDIETIFRENDGIL 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27661508 27667561 + BLOR04972 Blo12g00953 68214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00953 484 Pfam Protein phosphatase 2C 52 276 IPR001932 -
Blo12g00953 484 CDD PP2Cc 36 293 IPR001932 -
Blo12g00953 484 Gene3D - 31 300 IPR036457 -
Blo12g00953 484 ProSiteProfiles PPM-type phosphatase domain profile. 31 293 IPR001932 -
Blo12g00953 484 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 2 421 - -
Blo12g00953 484 SUPERFAMILY PP2C-like 34 293 IPR036457 -
Blo12g00953 484 SMART PP2C_4 21 291 IPR001932 -
Blo12g00953 484 PANTHER ALPHABET, ISOFORM E-RELATED 2 421 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00953 Blo-Chr12:27661508 Blo17g00668 Blo-Chr17:17077808 4.45E-168 dispersed
Blo12g00953 Blo-Chr12:27661508 Blo10g00378 Blo-Chr10:6280001 2.35E-164 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00953 - - tcc:18591227 745.347