Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00957 ATGCCACCACTTTTGTCGAACGCAAAGGTGGTGGAGTCCTTAATTTCACGCCGATATGGTGTCAAAGACGTGATTAGATCCTCCAAGTGGAATGAAAATCCGTCGAAATCCGCTTATATCCGACCGTTTAGTTCTGTTGCCGCTGGCAAACCCTTTGTGTTCCCTACATCGGCCGGTTTCGAAGAGGATCCTAATTTTTCATTGGGAAGGGTTCGTAGAAGTAATACTATTCAAACAAGGCAGTTTCTTGGCTTTGGCGACGGTGGAGAGGGCGGCGTTTTATCTAAAGTTTACGAGGAGAGGCGCGTGTTGGGGTACTCTCCAGAGCAGCTATTTAATGTGGTTGCAGCTGTAGATTCGTATCATGGTTTTGTTCCATGGTGTAAGCGTTCTGAGATCATTAAACACCATCCTGATGGAACTTTTGATGCAGAGCTGGAGATCGGCTTCAAATTTTTGATTGAAAGCTACATTTCACATGTAGAATTGAACAAGCCAAAATCTATAAGGACATCGGCGTCCCGTAGCATGCTCTTTGACCACTTGATAAATATTTGGGAGTTTAACTCTGGACCAGTTCCAGGGACCTGTAGCCTTTATTTTTTGGTGGATTTTAAGTTTCAGTCACCCCTTTACAGCCAGGTAGCATCAGTCTTCTTTAAGGAGGTTGTATCGCGGCTGGTCAATTCGTTCAATGAGCATTGCCATTTAATCTACGGACCAGGGATTCCTGTCCTCGATAATTCATACAGTCAACGGCCTTGA 765 44.71 MPPLLSNAKVVESLISRRYGVKDVIRSSKWNENPSKSAYIRPFSSVAAGKPFVFPTSAGFEEDPNFSLGRVRRSNTIQTRQFLGFGDGGEGGVLSKVYEERRVLGYSPEQLFNVVAAVDSYHGFVPWCKRSEIIKHHPDGTFDAELEIGFKFLIESYISHVELNKPKSIRTSASRSMLFDHLINIWEFNSGPVPGTCSLYFLVDFKFQSPLYSQVASVFFKEVVSRLVNSFNEHCHLIYGPGIPVLDNSYSQRP 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27702181 27704206 - BLOR04976 Blo12g00957 68218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00957 254 CDD COQ10p_like 98 236 IPR044996 GO:0006744|GO:0045333|GO:0048039
Blo12g00957 254 PANTHER SPERM PROTEIN HOMOLOG 1 247 IPR044996 GO:0006744|GO:0045333|GO:0048039
Blo12g00957 254 Gene3D - 96 240 IPR023393 -
Blo12g00957 254 SUPERFAMILY Bet v1-like 98 239 - -
Blo12g00957 254 PANTHER POLYKETIDE CYCLASE / DEHYDRASE AND LIPID TRANSPORT PROTEIN-RELATED 1 247 - -
Blo12g00957 254 Pfam Polyketide cyclase / dehydrase and lipid transport 105 231 IPR005031 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00957 K18588 COQ10; coenzyme Q-binding protein COQ10 - csv:101214157 332.028
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01530 Blo12g00957 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01530 Blo-Chr1:54898712 Blo12g00957 Blo-Chr12:27702181 2.21E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g764 Blo01g01530 Blo12g00957 Bda01g00566 . Bpe02g00427 . . Bma01g02276 . . Cma01g01839 Cma09g00228 Car01g01433 . . Cpe06g00159 . . . . . . . . . . . . . . . Cone4ag1575 . Cone17ag0844 Cone20ag0191 . Csa04g02407 . . . . . . . . . . . Cmo01g01898 Cmo09g00220 . . . Car09g00196 . . Bhi09g03327 . . . Hepe01g1761 Mch11g0287 . . . . . . . . . . Chy07g00131 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008704 0 1 2 1 0 1 2 1 1 1 1 1 1 1 1 2 1 3 1 1 1 1 1 1 1 0 1 4 0 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00957 Blo_Chr12 FPKM 2.26087 2.648349 3.683753 5.260932 12.120832 9.206212 10.649434 1.90998 2.825233 3.356371