Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00958 ATGACTTCTGCTTCTTTACCGCCTCCGTTTGTCTCTCTCTATGCCAGAAATCTTTCTCATTCCCACGGATCTTCGCTGATCTTATCTTTTCCGGCTGTGTCGATTCATATTCGGCTTTGTGCCCTAAAAACTGGAGCCAACGGGAGTAGGATTGGGAGCCGCGAAGTATACGGCTCGGATTCGTTAAGAAAGCCGGTTGTTCCTCCCGGAAAGGGTGTGGGTGAAATTTCCGGGAGAGAGGAGAAGAATGAAGGTCAGGGAAGTCATGAAGAGGAAGAAGAAGAAGAAGATGATTGGGTTGACTGGGAGGATAAGATTTTGGAGGACACTGTTCCTCTGGTGAGCTTCGTTAGAATGATTCTTCATTCTGGAACGTATGAAAGTGGAGATAGATTAAGCCCAGAGCATGAGAGAATCATTCTTGAGAGGTTGCTTCCATACCATCCAACGTATGAGAAAAAGATTGGATGCGGAATTGATCATATTGAGAAATGTTATGCATCGGCCGCAGGCAATCCATCAGTTCGGTGTGCTGCCGGAACTGCTGCCAATTGGGTGCAGGCAAAAGACACTTGGCGGCTTCACAAAGTCATTATAAGAGGGAAAGAGCAGAAGGCAGTATTGGAAGTTCCGAGGAAAATTCCAAGCCAAAAGGCTAGTGTTTTGCTGTACGATCTAGTTCCTTTCTCGGCTGGAATATTTCTTGAAATTGATCGTAATTTTGGGTATGCTCCGCCAACTGAAAACAGCTATTCAAGTGGTGGAAGATTGCCGGAGGATTTTCCGTTGAAAAGACAATTGTCGATCTATTCGCTGACGATTGATGAATTACAGAGCACCTTGGGAGGAGGGATGGGGAAGGACTTTGGTTCCATGAATATGGATGAGCTATTAAAGAATATTTGGAGTGCCGAAGAGACACAAGCCATCATGTCGTGTAGCACTGCAGCTGCGCAACAAGGTTGTGGGAATTCTGGTGTGTATTTACAAAGGCAGGGCTCCTTGACAATGCCCCCAACACTCACCCAGAAGACGGTGGATGAGGTGTGGAGGGATTTATCACAAGAAGATGATTTAGGGAAAGGTGGAAATGGTGGTGTTTTGTCTAATGGTATTCCACAGAGACAACAAACTTTGGGGGAGATGACTTTGGAAGCGTTCTTGTACAAAGCTGGTGTTGTGAGAGAGGACAACCATTTTACGGGAAAGACTAATAATGGTGGATTTTTTGGCAACATGAATGGTTTAGGAATCGATTTTCAGAAGCCAGAATCGAACTCAGGATTAGTAGGTAATAGAATTGCAGATACCAACAGTCAAATGTCAATTCTGTCGTCAAATTTACCTTTAAATTTTAATGGGGTTAGAACGAATCATCAACAACAGAAGATTTTCCCCAAACAACGTACTGTAACACATGGACAACTGCCTTTACCAAGTAGTGGTACCCACTTAGAAATTCCAGGAATGAGAGAGGGAATTGCAAATTTTGCAGATCACGGTCTGAATTCCACTGTGAGCCAAATGTCTACCGTGCAAAGTGGAGGTACAGGAGTGATTGGCTTAAAAGGTGGGCATGTTAATGTTGAAACAGTATCTCCAGGGAACCAAGTTTCATCAGATGGAATTCGGAAGAGTAATGGCGATATCTCTTCGATCTCATCTGTACCTTACATGTTTAATGGCGGAGTAAGAGGGAGGAGGTCAAGTGGGACAGTGGAGAAGGCTGCGGAGAGGAGACATAAGAGAATGATTAAAAACAGAGAATCTGCAGCAAGGTCTCGAGCCCGCAAGCAGGCTTACACAACGGAGCTGGAAGCTGAAGTTGCGAATCTGAAGGAGGAGAACGGAGCATTGCAGAAAAAACAGCCTGCGCTTATTGTGCGTTTTTCTGATGCAGGAAGCAATTATGGAAGTCCAAAAGAATCAGATCAGAGCAATATCACAAAAATGCAATTACTGAGCATAGCATGCATACTGGAAATGGAGCAGCTTCAAAAGACGAGTCATATACTTAGAATGATCCTGTCATTAGAAGGAGAAAAAAGCAATGGCTTGCTAATTGACTGTTTCACTGGAGTTGGTGGGAATGTCATCCGGTTGGCTCAGATGAGAAAATCCACAGCAACGCCGGCTTCGGAAGGATGCGCCATTGCTCTCGATGCTCGCTCTGATACTGTCTTCTTCACTAGAATGTCCAATTTCAGCCGCTTCTCACCTGGCGACGTTGATCGCTTCTCCTACGCGTCCGATTTTCAAGAGCACGATTATCTGGCCTCTGATATTTATCTGAAATTAGCTGTCTGTGATGACGAGGTTCAAGAGAGCTTTAAAGGCCCAGTTTCAGATCCAATTCCTGACAAAGAGACAACAGGAAACAATGATAGTCGTCATACCAGAAAAGAAGAAAAAGAAAAAGGAGTTAGGAAAGATGATGCTAATTTAGAGGACGACAATCGGTTCTTGGATTCAGCAAGAAGTTCCATCTCCGTTGCAATCAAAGAATCTCTTGATTGGAAAGAGGGATCTGAAGTTACATTGAGCAAGCCAGACGGGCGAAGCCTTTCTCCGTTACATCTGAACAATGTTGTTATCTCTTCACCTCGTTCTGTAGTAATGAAAAAGAACGTCGTCTCATCTCATTGGTACGATCCGCTTCCAGATACAGGAGCACCAAACTCTAGGTTCGCAAATGTTAGAGTGCAGAAAGGTTGGAGCTCAGAGAGGGTTCCATCTGCTAGTCGGAAGAGTGTGACTTCAGCGTCATTGGCTTTTAATAATGGGAGAAGATTGCCATCTAAATGGGAAGATGCTGAGAGGTGGATTTTCAGTCCAGCTTCCGGAGATGGTGTTATTAGGACATCACTTCCACGGCCTCAGCGGAGAGCAAAGTCCAAAAGCGGGCCAGTTGGTGGTCCTGGGGAATCATTCAATTCCTTGCATTCGCCGGCTACTTTGATGTTTGAAGGTGAGAATGCTGAGAATTTCTTCGTGGATTCGCCGCTTTCAGCTGGCTTAATATCAAGGAACGGGCTAGCTTTTAATTCTCGTAACCATGGGAATGGGAGAACAGAGCCCTGCATAACCCGCTCAGTTAGTTTACATGCTTGCTCTCAGACTCGCTCTACAGTTGCTTCTGGAAATCTTGATGAGTCCAAATGGGCCATTTCAAGAACGGACATTGCAACCCAGATAACGGCTGAGGTTAACGCTTCATCAACTCCTGAAAGTAGGCCTTCTACCTCTGCCTCTATTCCTTTTACACTGCCAATAGTGGAGCTGAAGAATATGCGATCTTCTAAAGTAGAAGTTAGAGATGTTCAAGTAGATAAACAAGTAACGATGAAGAGGAGGGGCTTTGAAAAAGAAAAAATTCGAATAGGTAGGAAGGGTAAAGCAGATGGCTGGCTTAGCAAAGATAAGGATTCAGATTCTCAAACTTGGAACGTCTCTGACACAGCGAAAAGCATCTTAAAGTTCACAAGAGACGAAGTAAAGATTACTGCTTGGGAGAATTTGCAAAAGGCAAAAGCTGAGGCATCTATAAGAAAGCTTGAGATGAAGCTGGAAAAAAGAAGATCATCGTCAATGGATAAGATCATGAAGAAGCTGAGATCTTCCCAGAGGCGAGCCCAAGAAATGAGAAGCTCAATTTTAGTCACCGGGGCTCATGAAGTTGCCAGGACAGCGAATAAAGCTTTATCTTTTCGCAGAGCGCGTCAGAAGAGTTCTTTAAGTGGCTGTTTTACCTGTTATGCCGTCTAG 3765 44.46 MTSASLPPPFVSLYARNLSHSHGSSLILSFPAVSIHIRLCALKTGANGSRIGSREVYGSDSLRKPVVPPGKGVGEISGREEKNEGQGSHEEEEEEEDDWVDWEDKILEDTVPLVSFVRMILHSGTYESGDRLSPEHERIILERLLPYHPTYEKKIGCGIDHIEKCYASAAGNPSVRCAAGTAANWVQAKDTWRLHKVIIRGKEQKAVLEVPRKIPSQKASVLLYDLVPFSAGIFLEIDRNFGYAPPTENSYSSGGRLPEDFPLKRQLSIYSLTIDELQSTLGGGMGKDFGSMNMDELLKNIWSAEETQAIMSCSTAAAQQGCGNSGVYLQRQGSLTMPPTLTQKTVDEVWRDLSQEDDLGKGGNGGVLSNGIPQRQQTLGEMTLEAFLYKAGVVREDNHFTGKTNNGGFFGNMNGLGIDFQKPESNSGLVGNRIADTNSQMSILSSNLPLNFNGVRTNHQQQKIFPKQRTVTHGQLPLPSSGTHLEIPGMREGIANFADHGLNSTVSQMSTVQSGGTGVIGLKGGHVNVETVSPGNQVSSDGIRKSNGDISSISSVPYMFNGGVRGRRSSGTVEKAAERRHKRMIKNRESAARSRARKQAYTTELEAEVANLKEENGALQKKQPALIVRFSDAGSNYGSPKESDQSNITKMQLLSIACILEMEQLQKTSHILRMILSLEGEKSNGLLIDCFTGVGGNVIRLAQMRKSTATPASEGCAIALDARSDTVFFTRMSNFSRFSPGDVDRFSYASDFQEHDYLASDIYLKLAVCDDEVQESFKGPVSDPIPDKETTGNNDSRHTRKEEKEKGVRKDDANLEDDNRFLDSARSSISVAIKESLDWKEGSEVTLSKPDGRSLSPLHLNNVVISSPRSVVMKKNVVSSHWYDPLPDTGAPNSRFANVRVQKGWSSERVPSASRKSVTSASLAFNNGRRLPSKWEDAERWIFSPASGDGVIRTSLPRPQRRAKSKSGPVGGPGESFNSLHSPATLMFEGENAENFFVDSPLSAGLISRNGLAFNSRNHGNGRTEPCITRSVSLHACSQTRSTVASGNLDESKWAISRTDIATQITAEVNASSTPESRPSTSASIPFTLPIVELKNMRSSKVEVRDVQVDKQVTMKRRGFEKEKIRIGRKGKADGWLSKDKDSDSQTWNVSDTAKSILKFTRDEVKITAWENLQKAKAEASIRKLEMKLEKRRSSSMDKIMKKLRSSQRRAQEMRSSILVTGAHEVARTANKALSFRRARQKSSLSGCFTCYAV 1254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27705911 27721030 + BLOR04977 Blo12g00958 68219

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00958 1254 Coils Coil 1175 1195 - -
Blo12g00958 1254 Coils Coil 595 622 - -
Blo12g00958 1254 MobiDBLite consensus disorder prediction 790 812 - -
Blo12g00958 1254 Pfam Protein of unknown function (DUF3223) 119 164 - -
Blo12g00958 1254 MobiDBLite consensus disorder prediction 60 99 - -
Blo12g00958 1254 Gene3D - 107 190 - -
Blo12g00958 1254 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 577 626 IPR004827 GO:0003700|GO:0006355
Blo12g00958 1254 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 582 597 IPR004827 GO:0003700|GO:0006355
Blo12g00958 1254 SMART brlzneu 575 639 IPR004827 GO:0003700|GO:0006355
Blo12g00958 1254 SUPERFAMILY Leucine zipper domain 579 624 IPR046347 GO:0003700|GO:0006355
Blo12g00958 1254 PANTHER OS02G0116800 PROTEIN 782 1252 - -
Blo12g00958 1254 CDD bZIP_plant_BZIP46 579 623 - -
Blo12g00958 1254 PANTHER REMORIN FAMILY PROTEIN 782 1252 - -
Blo12g00958 1254 MobiDBLite consensus disorder prediction 777 812 - -
Blo12g00958 1254 Gene3D - 577 628 - -
Blo12g00958 1254 MobiDBLite consensus disorder prediction 952 978 - -
Blo12g00958 1254 Pfam Remorin, C-terminal region 1142 1241 IPR005516 -
Blo12g00958 1254 Pfam bZIP transcription factor 577 622 IPR004827 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00958 - - - vvi:100257562 513.072
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo12g00958 Blo17g00880 CCT
Blo12g00958 Blo17g00880 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00266 Blo-Chr6:14244227 Blo12g00958 Blo-Chr12:27705911 4.24E-36 dispersed
Blo12g00958 Blo-Chr12:27705911 Blo13g00576 Blo-Chr13:27883822 2.71E-72 dispersed
Blo05g00645 Blo-Chr5:20401828 Blo12g00958 Blo-Chr12:27705911 3.16E-56 transposed
Blo06g00257 Blo-Chr6:13597226 Blo12g00958 Blo-Chr12:27705911 1.19E-17 transposed
Blo17g00880 Blo-Chr17:29005248 Blo12g00958 Blo-Chr12:27705911 1.26E-151 transposed
Blo01g01529 Blo-Chr1:54869572 Blo12g00958 Blo-Chr12:27705911 1.99E-55 wgd
Blo12g00958 Blo-Chr12:27705911 Blo04g00486 Blo-Chr4:4033572 1.49E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g756 . Blo12g00958 . Bda03g00210 . . Bma04g00162 . Cmo05g00178 Cmo12g00500 . Cma09g00233 . Car12g00511 Sed11g0942 . . Bhi04g00359 Tan02g1815 Cmetu03g0006 . Hepe08g1289 . Lcy13g2086 Cla08g01576 Cam08g2074 Cec08g1654 Cco08g1785 Clacu08g1761 . Cre08g1545 Cone4ag1581 Cone7ag1370 Cone17ag0845 Cone20ag0193 Lsi04g01558 Csa04g02412 . Cme03g02054 Blo17g00880 . . . . Bpe05g00024 . Bma05g00037 Sed13g1753 . Cmo09g00226 Cma12g00556 . Car05g00152 . . . Bhi09g03315 Tan01g4778 Cmetu07g0900 . . . . Cla05g02044 Cam05g2194 Cec05g2212 Cco05g2257 Clacu05g2188 Cmu05g2054 Cre05g2183 Lsi08g01479 Csa02g01942 Chy07g00136 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004657 2 1 2 3 1 0 2 1 1 1 1 1 0 1 1 2 1 3 2 1 1 2 1 1 1 0 1 6 1 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13074 PF03763 Remorin_C 3.20E-23 No_clan Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00958 Blo_Chr12 FPKM 3.556084 3.882058 3.843251 3.590653 3.958157 3.641186 4.337879 4.244513 4.006026 5.191562