Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00959 ATGGAGCTAGCGGACCAGCTGAAGTCGGAGGATCAGATGGAGATAATGACGATGATGATGCATCAAACGGACAAAAACCAACCATTTTGCGGCGCCTACAATGATATCACTGAATTTTCACCGTCTGATTATGCTGGTTCGAGCGGCTGTAATAACACCACTGCCATCCAACATTGTTCAGACAGCCTCCAACAGTCGTCTCATTCCTTCATAGATTTTCCTTTTTCTTCTTCTTTGGCGAACAATGGTTCTTCATTATCGGCAGAGAATCAGGCGCCATTTTTATCCAGGTGGGGAGGTGAATTGTTCAGCGGTGAAAATGGCTTCTTCTCTTCACCTGATTCTGAAACACCTAATTCAATGGCGACAATGAGGGAGATGATTTTCCGAATTGCAGCGATGCAGCCAATTCATATAGACCCAGAATCGGTGAAGCCGCCGAAACGAAGGAACGTGAAGATATCGAAAGACCCGCAAAGCGTAGCGGCTAGGCACCGGAGAGAGAAGATAAGTGAGAAAATCAGAATTCTTCAGCGTCTAGTACCAGGTGGGACGAAAATGGATACAGCTTCCATGTTGGACGAAGCTATTCATTACGTTAAATTCTTGAAGGGGCAAGTGCAGTCCTTGGAGAGAGCTGCAGGTAAAAGGCCTGCTGGTTTAGAGTGCCCCATTGCAGTCTCTAATGGCGGAAGCTATTTTCCCGTGGCAAAGGATTGCCAATTGCCTCGTCGAATGTAG 741 46.69 MELADQLKSEDQMEIMTMMMHQTDKNQPFCGAYNDITEFSPSDYAGSSGCNNTTAIQHCSDSLQQSSHSFIDFPFSSSLANNGSSLSAENQAPFLSRWGGELFSGENGFFSSPDSETPNSMATMREMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRREKISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKGQVQSLERAAGKRPAGLECPIAVSNGGSYFPVAKDCQLPRRM 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27725668 27726408 - BLOR04978 Blo12g00959 68220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00959 246 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 4 241 - -
Blo12g00959 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 213 IPR036638 GO:0046983
Blo12g00959 246 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 4 241 IPR045843 GO:0003700|GO:0006355
Blo12g00959 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 154 203 IPR011598 GO:0046983
Blo12g00959 246 SMART finulus 160 209 IPR011598 GO:0046983
Blo12g00959 246 CDD bHLH_AtIND_like 155 211 - -
Blo12g00959 246 Pfam Helix-loop-helix DNA-binding domain 163 203 IPR011598 GO:0046983
Blo12g00959 246 Gene3D - 153 219 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo07g00764 Blo-Chr7:24754605 Blo12g00959 Blo-Chr12:27725668 5.20E-37 dispersed
Blo10g00992 Blo-Chr10:29133536 Blo12g00959 Blo-Chr12:27725668 2.84E-33 dispersed
Blo12g00959 Blo-Chr12:27725668 Blo18g00720 Blo-Chr18:17979927 4.24E-18 dispersed
Blo06g00200 Blo-Chr6:8478312 Blo12g00959 Blo-Chr12:27725668 6.52E-42 transposed
Blo14g00841 Blo-Chr14:30713953 Blo12g00959 Blo-Chr12:27725668 1.06E-08 transposed
Blo15g00520 Blo-Chr15:9497515 Blo12g00959 Blo-Chr12:27725668 1.54E-11 transposed
Blo12g00959 Blo-Chr12:27725668 Blo17g00860 Blo-Chr17:28076507 7.94E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13075 PF00010 HLH 1.60E-06 No_clan Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00959 - - tcc:18591179 249.21