Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00960 ATGGCGGCTCACACAGTTCGGCAGATCTCCGAGTGCTTTGTCAAACCCAAGTACGAAACTGAAGAATCAAAGCTTCCGCATTATTTGAGCACATGGGATCTAGCCATGCTCGCCGTTCACTACATTCAAAAGGGTCTTCTTTTCGCCAAGCCCTCAGAAGCATATGATGGGCGTCAGTTTATGGAATCTCTCTTGGACAGGCTTAAAGATTCCTTATCTGTCGCCCTTGTTCATTTCTATCCACTCGCCGGCAGGCTAACAACAATTCTGAATGGATCGGAATCTTCCTGCTTGGTTTTCGTTGATTGTAATGGCAGTCCAGGAGCAAAGTTTATCCACTCGACTCTGGATATGACCATATCAGAGATTCTTTCGCCGCCCGACGTGCCGTTGCTAGTTCAATCCTTCTTCGATCACGATCGAGCTGCGAACCACGATGGGCACACCAGGTCATTGGTCTCCATTCAGGTGACGGAATTGTTGGACGGAGTCTTCATTGGGTGTTCGATGAACCACGCCATCGGCGACGGAACAGCTTTCTGGAATTTCTTCAATGCATGGTCTGAGATATTTCAAGCAAAGGGTGATGATAAGTCAATCTCACGCTTACCCATGATTAATCGCTGGTTTCCGGAGGGCCATGGCCCGAAACTCTACCTTCCTTTTAGTCGCACGGATGAGTTCATCAGCAGATTTGAAGCACCTCCACTTAGAGAGAGAATGTTCCACATCTCATCACAATCCATTGCGAAGATCAAAAGAAAGGCAAACTCAGAGTATAACACACAGAAAATTTCTTCCTTTCAGTCCTTGTGTGCGCTTCTATGGAGATGCATAACACGAGCCAGAATACAAACATCTCGCCTAAAACTGGACCAGTCAACCAACTGCAAGTTGGCCATCAATAACAGGACAAGACTAGATCCACCCTTGCCGGAAGACTATTTCGGAAACTGTGTTCAGGCGGTCAGAGGAGTAACCACGGCGGGCGAGTTGCTTGAACATGACCTAGGATGGGCGGCGTGGATCCTGCACGAGGCGGTGGTGAACCACAACGACAAGACAGTGCGGGACATGGTCGACAAATGGATTCAAACCCCTTTTGTTCGCCAAATAGGCCAAATCTTTGACCCAGAAAGCGTGTTCTTGGGAAGCTCGCCTCGATTCAACATGTACGGAAATGAATTTGGGATGGGAATAGGAGTAGCTCTTCGAAGTGGATGTGCTAATAAGTTTGATGGCAAAGTGACGACATACCCAGGATATGAAGGAGGAGGAAGCATAGATTTCGATATTTCCCTTCCACCTGATTCAATGACAGTTCTCGAATCTGACCAAGAATTCATGGAAGCTGTCTCCTTACCTCATTATATGCAACTGACATCTTGGCCCTGTTATGTATTTGCTAATATTAATCCAGTTCACGTAGCTGGGTTGGCACCTGATCCGATCCCAATCGCAGACGGTAGTGATGGAGGAGCTGATATACAATGGAATTATGGCTTAGAACCCAAGAAGAAAAGACTAAAGGAACAAGATTTCTTGGAGACCAATTCCCCAATATCTTCTCTAGATTTCCTGCCGGCTCGATCAGCTTCTACAGGACTTGGATTGTCTACTGGTGACTGGGCTTTGATGTCACTCATTGGAGAAGAAATCAACTGTGAATTACAGCGTCATGATGCAGAGATTAGTAGATTTCTCAAAACCCAGGGTGACAGATTGCGTCAAACTATATCAGACAAAGTCCAAGCGTCTCAGCTTCAGACCATCTCATTTATGAAAGAAACAATATTTCAGAAACTACGAGACAAAGAAGCCGAATTGGAGAGCATTGATGAAAAGAATGAATTGCTTGAAGAAAGAATGGAACAGTTAATAGCAGAAGCAAATGCATCGCAACAGCGTGCTAGATACAACGACAGTGTAATCTCAGCCCTCAAGTTTAACCTTCAAGTGTATGCTCAAGGCCAAGATAGTAAGGAAGGATGCGGCCATAGTGAGGTAGACACAACAGCTTCTTGCTGTAATGGCCACTCAAATGAATTTCACCTCCTTTGCAAGGACAATAATGGCGTGAAGGAGTTAATGACTTGTACGGCTTGTAGAGTTAATAAGGTTTGCATGCTTCTTGTTCCTTGTCGCCATATATGCTTGTATAACTGCGAAGGCATCCTACTTTCCTTAGACTCAAACAAATCAGTTCCTGCTCCGTTTCTGGCCAAAACATACCAGCTCGTGGACGATCCCTCTTCCGATCACATTGTTTCGTGGGGAGAAGATGACGCTACCTTCATTGTTTGGCGGCCACCAGAGTTCGCTCGCGATCTTCTCCCAAACTACTTCAAGCACAACAACTTCTCTAGCTTCGTTCGCCAACTCAATACTTACGGTTTCAGAAAGATCGTACCAGACAGATGGGAGTTTGCAAACGAGTTCTTCGGAAAAGGAAAAAAGCATTTGCTCTGTGAAATCCATCGGAAAAAAACTGCTCAGCCACAAATACCCATCAGCCACCAAATCTATAATCCTCCTCGCGGCGTCCATAGTCAGAGTTTCTTCCCATTTCCAAACCGATTCAGTGACTCGCCGTCAGACTCGGACGATCCAGGAAATAATTGGAGTGAGTCACGGCAATTTTCTTCATCCCCAAGAGGAAATCGTGAAGGGTTATCATTTTCCAGAGGCGATACTTACAACTCTAATACCTCAATTGCAGCCCTATCTGAGGATAATGAGAGACTCAAACAAAGCAACTCAGTTCTATTATCGGAACTCGCCCATATGAAAAGACTTTACAATGATATCATATATTTTGTTCAAAACCATGTGAAGCCTGTTACTCCGAGTGTTTCCTACCCTTCTTCATTGCTTGATCACGCGCAAAAGCCTTCGAACCAGCTTTTTGGCTATTATTCAACGAACCCTAAAGAAGCTTCTTTAGCCCATTTTGTCAACTCTCCCGATACTACTGCGAAGAGCTCCATTACAATTCTAGAAGATGAATCCTCCAGCCATTGCTCTAAGACTAAACTGTTTGGTGCATCTCTTCAATCTAAGAAAAGATTGCACTCAGAACAAAGCTATAAACTGATTAACATAGATACCAATAAAGCTCGGTTGAGCTTGGATAAAGAAGACTTGGAGCTGAATCTTATGCCTCCTTCCTCGTGA 3174 44.83 MAAHTVRQISECFVKPKYETEESKLPHYLSTWDLAMLAVHYIQKGLLFAKPSEAYDGRQFMESLLDRLKDSLSVALVHFYPLAGRLTTILNGSESSCLVFVDCNGSPGAKFIHSTLDMTISEILSPPDVPLLVQSFFDHDRAANHDGHTRSLVSIQVTELLDGVFIGCSMNHAIGDGTAFWNFFNAWSEIFQAKGDDKSISRLPMINRWFPEGHGPKLYLPFSRTDEFISRFEAPPLRERMFHISSQSIAKIKRKANSEYNTQKISSFQSLCALLWRCITRARIQTSRLKLDQSTNCKLAINNRTRLDPPLPEDYFGNCVQAVRGVTTAGELLEHDLGWAAWILHEAVVNHNDKTVRDMVDKWIQTPFVRQIGQIFDPESVFLGSSPRFNMYGNEFGMGIGVALRSGCANKFDGKVTTYPGYEGGGSIDFDISLPPDSMTVLESDQEFMEAVSLPHYMQLTSWPCYVFANINPVHVAGLAPDPIPIADGSDGGADIQWNYGLEPKKKRLKEQDFLETNSPISSLDFLPARSASTGLGLSTGDWALMSLIGEEINCELQRHDAEISRFLKTQGDRLRQTISDKVQASQLQTISFMKETIFQKLRDKEAELESIDEKNELLEERMEQLIAEANASQQRARYNDSVISALKFNLQVYAQGQDSKEGCGHSEVDTTASCCNGHSNEFHLLCKDNNGVKELMTCTACRVNKVCMLLVPCRHICLYNCEGILLSLDSNKSVPAPFLAKTYQLVDDPSSDHIVSWGEDDATFIVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFGKGKKHLLCEIHRKKTAQPQIPISHQIYNPPRGVHSQSFFPFPNRFSDSPSDSDDPGNNWSESRQFSSSPRGNREGLSFSRGDTYNSNTSIAALSEDNERLKQSNSVLLSELAHMKRLYNDIIYFVQNHVKPVTPSVSYPSSLLDHAQKPSNQLFGYYSTNPKEASLAHFVNSPDTTAKSSITILEDESSSHCSKTKLFGASLQSKKRLHSEQSYKLINIDTNKARLSLDKEDLELNLMPPSS 1057
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27732009 27739679 - BLOR04979 Blo12g00960 68221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00960 1057 Pfam HSF-type DNA-binding 739 828 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo12g00960 1057 Gene3D - 7 216 IPR023213 -
Blo12g00960 1057 Coils Coil 595 636 - -
Blo12g00960 1057 MobiDBLite consensus disorder prediction 859 897 - -
Blo12g00960 1057 ProSitePatterns HSF-type DNA-binding domain signature. 778 802 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo12g00960 1057 Gene3D - 228 444 IPR023213 -
Blo12g00960 1057 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 1 452 - -
Blo12g00960 1057 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 1 452 - -
Blo12g00960 1057 SMART hsfneu3 735 828 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo12g00960 1057 SUPERFAMILY Winged helix DNA-binding domain 736 828 IPR036390 -
Blo12g00960 1057 PRINTS Heat shock factor (HSF) domain signature 739 762 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo12g00960 1057 PRINTS Heat shock factor (HSF) domain signature 790 802 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo12g00960 1057 PRINTS Heat shock factor (HSF) domain signature 777 789 IPR000232 GO:0003700|GO:0006355|GO:0043565
Blo12g00960 1057 Pfam Transferase family 6 449 - -
Blo12g00960 1057 Gene3D - 731 829 IPR036388 -
Blo12g00960 1057 Coils Coil 905 925 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00960 - - - qsu:112025168 633.254
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo12g00960 Blo17g00879 CCT
Blo01g01524 Blo12g00960 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo01g01079 Blo-Chr1:37392407 Blo12g00960 Blo-Chr12:27732009 2.14E-101 dispersed
Blo04g00247 Blo-Chr4:1896359 Blo12g00960 Blo-Chr12:27732009 2.17E-100 dispersed
Blo09g00104 Blo-Chr9:1946164 Blo12g00960 Blo-Chr12:27732009 5.68E-67 dispersed
Blo12g00960 Blo-Chr12:27732009 Blo13g00792 Blo-Chr13:30652275 3.82E-77 dispersed
Blo19g00261 Blo-Chr19:15100614 Blo12g00960 Blo-Chr12:27732009 3.07E-10 dispersed
Blo01g01524 Blo-Chr1:54822225 Blo12g00960 Blo-Chr12:27732009 1.54E-114 transposed
Blo01g01525 Blo-Chr1:54833431 Blo12g00960 Blo-Chr12:27732009 0 transposed
Blo02g00985 Blo-Chr2:38010572 Blo12g00960 Blo-Chr12:27732009 3.86E-27 transposed
Blo02g01100 Blo-Chr2:41938089 Blo12g00960 Blo-Chr12:27732009 1.75E-50 transposed
Blo05g00644 Blo-Chr5:20337608 Blo12g00960 Blo-Chr12:27732009 1.09E-49 transposed
Blo12g00576 Blo-Chr12:24012925 Blo12g00960 Blo-Chr12:27732009 6.73E-44 transposed
Blo15g00160 Blo-Chr15:1640142 Blo12g00960 Blo-Chr12:27732009 9.14E-50 transposed
Blo17g00879 Blo-Chr17:28920733 Blo12g00960 Blo-Chr12:27732009 4.35E-46 transposed
Blo01g01522 Blo-Chr1:54810815 Blo12g00960 Blo-Chr12:27732009 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g751 Blo01g01524 Blo12g00960 Bda01g00572 . Bpe02g00433 . Bma04g00159 Bma01g02268 . . Cma01g01830 Cma09g00242 Car01g01428 . . Cpe06g00167 . . . . . . . . . . . . . . . Cone4ag1584 Cone7ag1365 Cone17ag0847 Cone20ag0195 Lsi04g01547 Csa04g02422 . . Blo17g00879 . . . . Bpe05g00027 . . Sed01g2676 Cmo01g01889 Cmo09g00236 . . . Car09g00202 . Cpe02g00188 Bhi09g03306 Tan01g4760 Cmetu07g0261 . Hepe01g1776 Mch11g0302 . Cla05g02053 Cam05g2206 Cec05g2222 Cco05g2265 Clacu05g2198 Cmu05g2064 Cre05g2190 . . Chy07g00143 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo18g00282 . 17 245 HSF AT4G17750 52.1 7.8e-58 221.9
Blo05g00378 . 38 238 HSF AT4G17750 54.2 1.2e-55 214.5
Blo17g00285 . 39 225 HSF AT4G17750 53.7 8.1e-55 211.8
Blo02g00237 . 9 207 HSF AT4G17750 52.7 2.0e-53 207.2
Blo01g01525 . 17 115 HSF AT4G17750 71.7 4.0e-38 156.4
Blo12g00960 BCT,CCT 734 832 HSF AT4G17750 69.7 2.6e-37 153.7
Blo02g01100 . 30 125 HSF AT4G17750 70.8 9.9e-37 151.8
Blo02g00983 . 35 271 HSF AT5G16820 64.7 4.0e-67 252.7
Blo05g00378 . 37 244 HSF AT5G16820 53.5 1.4e-56 217.6
Blo18g00282 . 40 226 HSF AT5G16820 55.8 5.1e-54 209.1
Blo02g00237 . 11 206 HSF AT5G16820 53.1 1.6e-52 204.1
Blo18g00282 . 25 226 HSF AT1G32330 52.2 6.0e-55 212.2
Blo02g00237 . 3 189 HSF AT1G32330 50.7 3.2e-48 189.9
Blo01g01525 . 15 114 HSF AT1G32330 70.0 2.0e-37 154.1
Blo12g00960 BCT,CCT 732 831 HSF AT1G32330 68.0 1.3e-36 151.4
Blo18g00282 . 40 228 HSF AT3G02990 55.4 1.2e-55 214.5
Blo02g00237 . 11 209 HSF AT3G02990 52.9 5.5e-53 205.7
Blo01g01525 . 5 130 HSF AT3G02990 58.9 2.5e-37 153.7
Blo17g00285 . 30 246 HSF AT2G26150 58.3 3.9e-72 268.9
Blo11g00264 BCT 7 382 HSF AT4G18880 50.6 3.1e-89 325.9
Blo01g01525 . 14 129 HSF AT4G18880 62.1 1.8e-36 150.6
Blo02g00237 . 5 475 HSF AT4G13980 55.1 1.5e-127 453.4
Blo18g00282 . 26 254 HSF AT3G22830 56.0 4.4e-67 252.3
Blo17g00285 . 30 232 HSF AT3G22830 53.3 9.0e-60 228.0
Blo05g00378 . 26 314 HSF AT3G51910 51.6 4.2e-69 258.5
Blo16g00980 BCT 167 373 HSF AT5G54070 51.0 1.4e-50 197.2
Blo15g00160 . 14 120 HSF AT4G36990 63.6 4.0e-38 155.6
Blo12g00576 . 13 112 HSF AT4G36990 65.0 1.7e-36 150.2
Blo02g01100 . 26 326 HSF AT4G11660 52.3 7.2e-80 294.7
Blo01g01525 . 13 116 HSF AT4G11660 75.0 1.7e-44 177.2
Blo12g00960 BCT,CCT 730 833 HSF AT4G11660 71.2 1.6e-42 170.6
Blo12g00576 . 13 111 HSF AT4G11660 70.7 4.0e-38 156.0
Blo12g00576 . 18 212 HSF AT2G41690 54.6 4.9e-45 178.3
Blo01g01525 . 16 340 HSF AT1G46264 56.8 3.8e-91 332.0
Blo12g00960 BCT,CCT 733 1057 HSF AT1G46264 54.6 2.3e-88 322.8
Blo15g00160 . 17 115 HSF AT1G46264 72.7 4.7e-41 165.6
Blo12g00576 . 15 112 HSF AT1G46264 69.4 2.8e-38 156.4
Blo02g00237 . 5 102 HSF AT1G46264 70.4 8.3e-38 154.8
Blo05g00378 . 20 140 HSF AT1G46264 61.2 1.2e-36 151.0
Blo16g01032 . 6 179 HSF AT3G24520 64.4 3.6e-59 225.7
Blo01g00509 CCT 1 163 HSF AT3G24520 69.9 3.7e-56 215.7
Blo08g00287 CCT 6 175 HSF AT3G24520 57.1 8.1e-51 198.0
Blo18g00282 . 17 245 HSF AT4G17750 52.1 7.8e-58 221.9
Blo05g00378 . 38 238 HSF AT4G17750 54.2 1.2e-55 214.5
Blo17g00285 . 39 225 HSF AT4G17750 53.7 8.1e-55 211.8
Blo02g00237 . 9 207 HSF AT4G17750 52.7 2.0e-53 207.2
Blo01g01525 . 17 115 HSF AT4G17750 71.7 4.0e-38 156.4
Blo12g00960 BCT,CCT 734 832 HSF AT4G17750 69.7 2.6e-37 153.7
Blo02g01100 . 30 125 HSF AT4G17750 70.8 9.9e-37 151.8
Blo02g00983 . 35 271 HSF AT5G16820 64.7 4.0e-67 252.7
Blo05g00378 . 37 244 HSF AT5G16820 53.5 1.4e-56 217.6
Blo18g00282 . 40 226 HSF AT5G16820 55.8 5.1e-54 209.1
Blo02g00237 . 11 206 HSF AT5G16820 53.1 1.6e-52 204.1
Blo18g00282 . 25 226 HSF AT1G32330 52.2 6.0e-55 212.2
Blo02g00237 . 3 189 HSF AT1G32330 50.7 3.2e-48 189.9
Blo01g01525 . 15 114 HSF AT1G32330 70.0 2.0e-37 154.1
Blo12g00960 BCT,CCT 732 831 HSF AT1G32330 68.0 1.3e-36 151.4
Blo18g00282 . 40 228 HSF AT3G02990 55.4 1.2e-55 214.5
Blo02g00237 . 11 209 HSF AT3G02990 52.9 5.5e-53 205.7
Blo01g01525 . 5 130 HSF AT3G02990 58.9 2.5e-37 153.7
Blo17g00285 . 30 246 HSF AT2G26150 58.3 3.9e-72 268.9
Blo11g00264 BCT 7 382 HSF AT4G18880 50.6 3.1e-89 325.9
Blo01g01525 . 14 129 HSF AT4G18880 62.1 1.8e-36 150.6
Blo02g00237 . 5 475 HSF AT4G13980 55.1 1.5e-127 453.4
Blo18g00282 . 26 254 HSF AT3G22830 56.0 4.4e-67 252.3
Blo17g00285 . 30 232 HSF AT3G22830 53.3 9.0e-60 228.0
Blo05g00378 . 26 314 HSF AT3G51910 51.6 4.2e-69 258.5
Blo16g00980 BCT 167 373 HSF AT5G54070 51.0 1.4e-50 197.2
Blo15g00160 . 14 120 HSF AT4G36990 63.6 4.0e-38 155.6
Blo12g00576 . 13 112 HSF AT4G36990 65.0 1.7e-36 150.2
Blo02g01100 . 26 326 HSF AT4G11660 52.3 7.2e-80 294.7
Blo01g01525 . 13 116 HSF AT4G11660 75.0 1.7e-44 177.2
Blo12g00960 BCT,CCT 730 833 HSF AT4G11660 71.2 1.6e-42 170.6
Blo12g00576 . 13 111 HSF AT4G11660 70.7 4.0e-38 156.0
Blo12g00576 . 18 212 HSF AT2G41690 54.6 4.9e-45 178.3
Blo01g01525 . 16 340 HSF AT1G46264 56.8 3.8e-91 332.0
Blo12g00960 BCT,CCT 733 1057 HSF AT1G46264 54.6 2.3e-88 322.8
Blo15g00160 . 17 115 HSF AT1G46264 72.7 4.7e-41 165.6
Blo12g00576 . 15 112 HSF AT1G46264 69.4 2.8e-38 156.4
Blo02g00237 . 5 102 HSF AT1G46264 70.4 8.3e-38 154.8
Blo05g00378 . 20 140 HSF AT1G46264 61.2 1.2e-36 151.0
Blo16g01032 . 6 179 HSF AT3G24520 64.4 3.6e-59 225.7
Blo01g00509 CCT 1 163 HSF AT3G24520 69.9 3.7e-56 215.7
Blo08g00287 CCT 6 175 HSF AT3G24520 57.1 8.1e-51 198.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000366 2 4 2 1 1 5 0 6 6 3 4 6 3 5 5 6 6 2 2 6 6 1 6 6 7 5 9 6 6 2 129
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13076 PF02458 Transferase 3.50E-80 CL0149 Blo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00960 Blo_Chr12 FPKM 30.578238 31.280037 34.202065 34.284058 37.175983 26.511267 36.985081 46.76482 46.522518 47.538033