Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00962 ATGGAAGGAGAGTTATGTTCTGGTGCTTCTTCTTCATCGTCTTCAACCTCTAGCACAGACCAGAAGATGAAGCGGAGGCAACTCCGGCGAGAAGAAAAGCCCTACAGAGGCATACGGATGAGGAAATGGGGAAAGTGGGTGGCCGAGATTAGAGAGCCTAATAAAAGGTCGAGGATTTGGTTGGGTTCATACTCCACCCCCGTCGCCGCCGCTCGTGCGTACGACACCGCCGTCTTTTATCTCCGGGGTCCATCCGCTTCCTTGAATTTTCCGGAGCTCATAATTGGAGAAGAGCAGCCGCGAGATTTGTCCGCCGCCTCTATACGCAAAATCGCCACTGAAGTTGGGGCTAAAGTTGACGCCGTTCAAACAGCTCTTCATTCGTCGACGTCTGTTTCTACTCAGCCGCCGGAAAAGCCGGACTTGAACCAGTTTCCCATCCCCGAAAGTTCAGACGAAGGCTGA 465 52.9 MEGELCSGASSSSSSTSSTDQKMKRRQLRREEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSASLNFPELIIGEEQPRDLSAASIRKIATEVGAKVDAVQTALHSSTSVSTQPPEKPDLNQFPIPESSDEG 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27752920 27753384 - BLOR04981 Blo12g00962 68223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00962 154 Pfam AP2 domain 35 83 IPR001471 GO:0003700|GO:0006355
Blo12g00962 154 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Blo12g00962 154 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Blo12g00962 154 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 152 - -
Blo12g00962 154 PIRSF PTI6 4 151 IPR017392 GO:0003700
Blo12g00962 154 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Blo12g00962 154 PRINTS Ethylene responsive element binding protein signature 73 93 IPR001471 GO:0003700|GO:0006355
Blo12g00962 154 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
Blo12g00962 154 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
Blo12g00962 154 MobiDBLite consensus disorder prediction 1 21 - -
Blo12g00962 154 MobiDBLite consensus disorder prediction 127 154 - -
Blo12g00962 154 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 152 - -
Blo12g00962 154 CDD AP2 35 93 IPR001471 GO:0003700|GO:0006355
Blo12g00962 154 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00826 Blo-Chr12:26606094 Blo12g00962 Blo-Chr12:27752920 2.24E-25 dispersed
Blo12g00962 Blo-Chr12:27752920 Blo18g00657 Blo-Chr18:12325563 2.34E-72 dispersed
Blo12g00962 Blo-Chr12:27752920 Blo12g00963 Blo-Chr12:27757652 9.38E-108 tandem
Blo18g00187 Blo-Chr18:1798920 Blo12g00962 Blo-Chr12:27752920 1.75E-21 transposed
Blo01g01521 Blo-Chr1:54799376 Blo12g00962 Blo-Chr12:27752920 2.29E-84 wgd
Blo12g00962 Blo-Chr12:27752920 Blo04g01061 Blo-Chr4:15228463 3.35E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13077 PF00847 AP2 8.20E-12 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00962 K09286 - pvy:116125671 208.764