Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00965 ATGGCTGTGGAGCTCATGGTGGGTTTTGGTTGCGACGGTTTTTCTGTAAAAATGGACGAGTGTTCGACTGTCTCCGCCGTAGAAGAGGCGGCCTCTGCGGGTATTCAGGGGGTTGAGAGTTTCCTTAGATTGATGTCTGATGGCTCCAATACTCAGTTTCAAGAGCCTTCTTCGAGTCCGAGCGCTGACGCTGTTGCAGACATGGCGGTCGATAAGTTCAAGAAGGTTATTTCGTTACTGGATCGGAACAGAACCGGCCACGCTCGCTTCCGAAGGGCTCCAGCGGCGCCTCCGCCACAGCAGCGCCAGACGGAGGAACAAGCTTCTGCTTTTAGAGCCTATTCTCGCACACCGGTGGCTCGTTTACCTTCTCTGCCTCACGTTCCGCTCACTTTCCAATCCCAGATGGCGGCAAAGAACGGGTCCGCCGAGGGAAAGGAAACGACTTTGACCACCATTACTTTTTCTCCTTCGCCGCCGGTTTCTGCGGCGAATTCGTATATCTCGTCGCTAACGGGGGATTCTGAGAGTTTGCAACCTTCTTTATGCTCTGGGTTCCAGTTTACCTCGTCCACCGGAAAGCCTCCTCTTTCTTCGTCTTTGATGAAGAGGAAGTGCAACTCTATGGATGAGGCGACTCTTAAATGTGGCTCTCCTTCTCGATGCCATTGTTCGAAGAAAAGAAAAACAAGAATAAAGAGAGTGATTAGAGTTCCAGCCATCAGCCTGAAAATGGCTGATATTCCAGCGGACGATTATTCCTGGAGGAAGTACGGCCAAAAACCCATTAAAGGCTCTCCTCATCCAAGGGGGTACTATAAGTGTAGTAGTCTGAGAGGATGCCCAGCGAGGAAACACGTTGAGCGCGCCGCAGACGATGCAGAGATGTTGATCATAACTTACGAGAACGATCACAATCATGTCCACTCTATCCCGGAAACCACGGCTGCGAATGCCCTTGAATCATAA 969 51.08 MAVELMVGFGCDGFSVKMDECSTVSAVEEAASAGIQGVESFLRLMSDGSNTQFQEPSSSPSADAVADMAVDKFKKVISLLDRNRTGHARFRRAPAAPPPQQRQTEEQASAFRAYSRTPVARLPSLPHVPLTFQSQMAAKNGSAEGKETTLTTITFSPSPPVSAANSYISSLTGDSESLQPSLCSGFQFTSSTGKPPLSSSLMKRKCNSMDEATLKCGSPSRCHCSKKRKTRIKRVIRVPAISLKMADIPADDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERAADDAEMLIITYENDHNHVHSIPETTAANALES 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27764937 27766080 - BLOR04984 Blo12g00965 68226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00965 322 MobiDBLite consensus disorder prediction 87 111 - -
Blo12g00965 322 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 19 322 IPR044810 GO:0003700
Blo12g00965 322 SUPERFAMILY WRKY DNA-binding domain 246 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Blo12g00965 322 Pfam Plant zinc cluster domain 203 247 IPR018872 -
Blo12g00965 322 Pfam WRKY DNA -binding domain 251 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Blo12g00965 322 Gene3D WRKY domain 238 310 IPR036576 GO:0003700|GO:0006355|GO:0043565
Blo12g00965 322 PANTHER WRKY TRANSCRIPTION FACTOR NTEIG-D48 19 322 - -
Blo12g00965 322 ProSiteProfiles WRKY domain profile. 244 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Blo12g00965 322 SMART WRKY_cls 249 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00393 Blo-Chr5:4849688 Blo12g00965 Blo-Chr12:27764937 3.88E-59 dispersed
Blo05g00636 Blo-Chr5:20014165 Blo12g00965 Blo-Chr12:27764937 8.47E-100 dispersed
Blo12g00965 Blo-Chr12:27764937 Blo16g00826 Blo-Chr16:34631010 2.14E-58 dispersed
Blo12g00965 Blo-Chr12:27764937 Blo01g01339 Blo-Chr1:51012480 1.28E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13079 PF03106 WRKY 3.30E-25 CL0274 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00965 - - cmo:103493562 382.489