Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00966 ATGGCTTCTCTCTTGTCCTCATCGGCCATCTTCATGGCCTCCTTCTTCATCTTCACTCTATCGGCCGCGATCGACATGTCCATCGTTTCCTTTGACGGTGATTTCAAGTCGAGCCAAAGAACAGAGGAGGAGGTCATGGCGATCTATGAGGACTGGCTTCTCAAGCACGGTAAGGTGTACAACGCTTTAGGCGAAAAGGATAAGAGATTTGATATTTTCAAACAGAATCTCAACTTCATCGACGGACGTAACTCCGAGAACCGGACTTTCAGACTGGGACTGAACCGGTTCGCCGATCTGACTAACGAGGAGTACAGGTCCATTTACCTAGGTTCTAGGGCCGGCCGGAGGAAGAAGGTTATGAAGACGAGCAATCGATACGCGCCAGGTGTCGCCGACAGTTTGCCGGACTCCGTAGACTGGAGGGAAAAAGGTGCCGTCGCCGAAGTGAAAGACCAAGGAAGCTGCGGTGATTGCTGGGCGTTCTCGACAATCGCTGCGGTTGAAGGGATAAACAAGATTGTCACTGGCGAATTGATATCACTGTCAGAACAGGAGCTGGTGGATTGTGATACTTCGTACAACGAAGGATGCAATGGAGGCCTTATGGACTATGCTTTTGAGTTTATCATCAGAAATGGTGGAATCGATTCAGAAGACGATTACCCTTACAAAGGATACGACGGCAGATGTGATCAAAACAGGAAAAATGCTAGAGTTGTTTCAATTGATGATTACGAGGACGTACCTGTGAACGACGAGACAGCTCTGAAAAAGGCTGTTGCAGATCAGCCTGTGGCTGTCGCCATTGAAGGCGGGGGAAGGGATTTCCAGTTTTACGAATCGGGTATATTTACTGGACGATGTGCGACAGCTCTGGATCACGGAGTCAATGCCGTCGGATATGGAACGGAAAACGGCAAGGATTACTGGATTGTACGAAACTCATGGGGGTCGAGCTGGGGCGAGGATGGGTATATTCGAATGGAGAGAAACATTGACGCCTCTGAAGGAAAATGTGGAATTGCAATGGAGGCTTCTTACCCGATAAAGAAAGGGCAGAACCCACCGAATCCGGGCCCAACTCCTCCTTCTCCGGTCAAACCTCCGACCGTTTGCGACAGTTACAGCACTTGTCCCGAGAGCAACACCTGTTGCTGCGTCTTTGAATTTGGAAGATATTGTTTTTCATGGGGATGCTGCCCTCTTGAATCTGCCACTTGCTGTGACGACCGTTACAGCTGTTGCCCCCATGAATATCCCGTCTGTAACGTTAACGAAGGGACATGTCTGATGAGCAAGGACAGTCCATTTGGAATAAAGGCAACGAGGAGAACTGCCGCTAAACCATACTGGGCAATCGAGGGTGATGCGATAGGAGCAGCGATTGAGATCTCCTAA 1401 49.54 MASLLSSSAIFMASFFIFTLSAAIDMSIVSFDGDFKSSQRTEEEVMAIYEDWLLKHGKVYNALGEKDKRFDIFKQNLNFIDGRNSENRTFRLGLNRFADLTNEEYRSIYLGSRAGRRKKVMKTSNRYAPGVADSLPDSVDWREKGAVAEVKDQGSCGDCWAFSTIAAVEGINKIVTGELISLSEQELVDCDTSYNEGCNGGLMDYAFEFIIRNGGIDSEDDYPYKGYDGRCDQNRKNARVVSIDDYEDVPVNDETALKKAVADQPVAVAIEGGGRDFQFYESGIFTGRCATALDHGVNAVGYGTENGKDYWIVRNSWGSSWGEDGYIRMERNIDASEGKCGIAMEASYPIKKGQNPPNPGPTPPSPVKPPTVCDSYSTCPESNTCCCVFEFGRYCFSWGCCPLESATCCDDRYSCCPHEYPVCNVNEGTCLMSKDSPFGIKATRRTAAKPYWAIEGDAIGAAIEIS 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27768048 27770320 + BLOR04985 Blo12g00966 68227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00966 466 SMART pept_c1 135 350 IPR000668 GO:0006508|GO:0008234
Blo12g00966 466 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 310 329 IPR025661 -
Blo12g00966 466 PANTHER CYSTEINE PROTEASE 30 380 - -
Blo12g00966 466 Gene3D Cysteine proteinases 28 352 - -
Blo12g00966 466 CDD Peptidase_C1A 136 349 IPR039417 -
Blo12g00966 466 SMART Inhibitor_I29_2 49 105 IPR013201 -
Blo12g00966 466 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 293 303 IPR025660 -
Blo12g00966 466 Pfam Granulin 384 431 IPR000118 -
Blo12g00966 466 PRINTS Papain cysteine protease (C1) family signature 153 168 IPR000668 GO:0006508|GO:0008234
Blo12g00966 466 PRINTS Papain cysteine protease (C1) family signature 295 305 IPR000668 GO:0006508|GO:0008234
Blo12g00966 466 PRINTS Papain cysteine protease (C1) family signature 310 316 IPR000668 GO:0006508|GO:0008234
Blo12g00966 466 Pfam Papain family cysteine protease 135 350 IPR000668 GO:0006508|GO:0008234
Blo12g00966 466 Gene3D Granulin 370 433 IPR037277 -
Blo12g00966 466 Pfam Cathepsin propeptide inhibitor domain (I29) 49 105 IPR013201 -
Blo12g00966 466 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 153 164 IPR000169 -
Blo12g00966 466 SUPERFAMILY Cysteine proteinases 41 350 IPR038765 -
Blo12g00966 466 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 30 380 - -
Blo12g00966 466 SUPERFAMILY Granulin repeat 370 404 - -
Blo12g00966 466 SMART GRAN_2 373 430 IPR000118 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00966 K25900 RD21; cysteine proteinase RD21 [EC:3.4.22.-] - pop:18104848 721.465
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo04g01266 Blo-Chr4:25890548 Blo12g00966 Blo-Chr12:27768048 0 dispersed
Blo08g00373 Blo-Chr8:6197040 Blo12g00966 Blo-Chr12:27768048 1.72E-65 dispersed
Blo12g00966 Blo-Chr12:27768048 Blo13g00466 Blo-Chr13:25375146 1.92E-129 dispersed
Blo13g00085 Blo-Chr13:1385057 Blo12g00966 Blo-Chr12:27768048 9.75E-25 dispersed
Blo08g00599 Blo-Chr8:21829386 Blo12g00966 Blo-Chr12:27768048 1.10E-120 transposed
Blo14g00881 Blo-Chr14:33092178 Blo12g00966 Blo-Chr12:27768048 3.55E-126 transposed
Blo18g00796 Blo-Chr18:23336330 Blo12g00966 Blo-Chr12:27768048 1.88E-100 transposed
Blo12g00966 Blo-Chr12:27768048 Blo04g01066 Blo-Chr4:15310825 3.37E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g726 . Blo12g00966 . Bda03g00202 . Bpe04g00172 . . . . Cma01g01819 Cma09g00255 Car01g01420 . . Cpe06g00176 . . . . . . . . . . . . . . . . . Cone17ag0859 Cone20ag0206 Lsi04g01527 Csa04g02439 . . . . . Bda01g01515 . . . . Sed01g2687 Cmo01g01875 Cmo09g00249 . . . Car09g00214 . Cpe02g00195 Bhi09g03290 Tan01g4741 Cmetu07g1603 . Hepe01g1793 Mch11g0326 . Cla05g02070 Cam05g2222 Cec05g2241 Cco05g2282 Clacu05g2215 Cmu05g2082 Cre05g2206 . . Chy07g00156 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009051 1 1 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00966 Blo_Chr12 FPKM 4.678257 5.283955 18.569963 18.355921 8.011588 8.759512 8.111214 19.728371 18.073656 18.699631