Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00970 ATGGCTCCGTATCATTCCAACTCTGCATTTCCTGTTGAATCATTGTATTGCTCAGAAGAGCATTGGGAGGAGGAATACGAAACAACGGAGGTCAATTTTGAGGAGAATGAAGTTGGGAGAAGCCATTACTGTGATCTAAATAGTACACAGAAACCGAAAATCTTGTTGGAGCAAGATCTATTCTGGGAAGAAGACGAGTTGATCTCTCTACTGTCGAAAGAACACCCGAATAGACTCCATAAAAACCTACTCGCCGACCCATGTCTCGCCGGAGCCAGAAGAAACGCCGTCGAATGGATGCTCAGAGTCACAACCCACCATTGTTTTTCTGCACTCACCGCCGTTCTCTCCGTTGATTATCTCGACAGGTTTCTCTGCAGCTTTCACTTTCAGAAAGAGAACCCATGGATGATCCAGCTTGCTGCAGTGGCTTGTATCTCTTTAGCTGCGAAAGTAGAGGAGACTCACGTTCCGCTTTTTCTGGATCTGCAGGTGGACGAGAGTAGCTACTTATTTGAAGCTAAAATGATTAAGAAAATGGAGATTCTGGTTCTCTCATCTCTACAATGGAGAATGAATCCTGTTACTGCACTTTCCTTTCTAGATTTCATAACACGAAAGCTTGGATTAAGGGATCATCTCTGTTTCGAATTTCTCGGGCGGGCCGAGCAAGTACTTCTCTCTCTAATTACAGATTCTAGGTTCATGTCTTTTCTTCCTTCTGTTCTAGCCAACGCCATTGTACTCCATCTTGTAAATAACATAGAGCCAAGTCTTGCTATTGAATACCAAAATCAGCTGTTTGGTATTCTTCATGTTGACAAGGACAGGGTAGAGGACTGCTACAGACTTATTTCGGAAGAAACAGGCAGCCATGGCAACCGTAGCCACAAGCGCAAGTTTGGTTCTTTACCCTGTAGCCCAAGTGGTGTTTTAGAGCTCCATTTAAGCTCGGATAGTTCGAATGACTCTTGGCCAGCGACATCCTCGCCAGGACCATTGTCGAAGAAAACGAAGGTTATTCATGAACAGCTAATGGAGACACTGAAAACCCATAAAAGTGCTGCAGATTTACTAGGCATTCCTCGCTAA 1092 44.32 MAPYHSNSAFPVESLYCSEEHWEEEYETTEVNFEENEVGRSHYCDLNSTQKPKILLEQDLFWEEDELISLLSKEHPNRLHKNLLADPCLAGARRNAVEWMLRVTTHHCFSALTAVLSVDYLDRFLCSFHFQKENPWMIQLAAVACISLAAKVEETHVPLFLDLQVDESSYLFEAKMIKKMEILVLSSLQWRMNPVTALSFLDFITRKLGLRDHLCFEFLGRAEQVLLSLITDSRFMSFLPSVLANAIVLHLVNNIEPSLAIEYQNQLFGILHVDKDRVEDCYRLISEETGSHGNRSHKRKFGSLPCSPSGVLELHLSSDSSNDSWPATSSPGPLSKKTKVIHEQLMETLKTHKSAADLLGIPR 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27787416 27788760 + BLOR04989 Blo12g00970 68231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00970 363 Gene3D - 194 283 - -
Blo12g00970 363 CDD CYCLIN 93 185 IPR013763 -
Blo12g00970 363 MobiDBLite consensus disorder prediction 317 335 - -
Blo12g00970 363 Pfam Cyclin, C-terminal domain 195 299 IPR004367 -
Blo12g00970 363 Gene3D - 86 193 - -
Blo12g00970 363 SMART Cyclin_C_2 195 318 IPR004367 -
Blo12g00970 363 PANTHER CYCLIN D3.1 PROTEIN 47 325 - -
Blo12g00970 363 SUPERFAMILY Cyclin-like 61 193 IPR036915 -
Blo12g00970 363 PANTHER CYCLINS 47 325 IPR039361 -
Blo12g00970 363 SMART cyclin_7 98 186 IPR013763 -
Blo12g00970 363 Pfam Cyclin, N-terminal domain 91 193 IPR006671 -
Blo12g00970 363 ProSitePatterns Cyclins signature. 93 124 IPR006671 -
Blo12g00970 363 MobiDBLite consensus disorder prediction 317 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00970 K14505 CYCD3; cyclin D3, plant - zju:107419965 401.749
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo12g00970 Blo17g00869 CCT
Blo12g00970 Blo18g00706 CCT
Blo12g00970 Blo17g00869 ECH
Blo12g00970 Blo18g00706 ECH
Blo01g01517 Blo12g00970 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00970 Blo-Chr12:27787416 Blo16g00407 Blo-Chr16:15303077 4.64E-82 dispersed
Blo01g01517 Blo-Chr1:54732096 Blo12g00970 Blo-Chr12:27787416 1.90E-167 wgd
Blo12g00970 Blo-Chr12:27787416 Blo17g00869 Blo-Chr17:28497262 2.43E-132 wgd
Blo12g00970 Blo-Chr12:27787416 Blo18g00706 Blo-Chr18:16177412 1.06E-120 wgd
Blo12g00970 Blo-Chr12:27787416 Blo04g01071 Blo-Chr4:15393536 5.13E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g719 Blo01g01517 Blo12g00970 . . . . Bma04g00152 . Cmo05g00163 Cmo12g00510 Cma01g01813 Cma09g00261 Car01g01415 Car12g00528 Sed10g2003 Cpe06g00180 Cpe07g00498 Bhi04g00381 Tan02g0947 Cmetu01g0988 . Hepe08g1303 . Lcy13g2102 Cla08g01590 Cam08g2089 Cec08g1670 Cco08g1802 Clacu08g1775 . Cre08g1559 . Cone7ag1351 Cone17ag0862 Cone20ag0209 Lsi04g01520 Csa04g02445 . Cme03g02070 Blo17g00869 Blo18g00706 . . Bpe02g01789 Bpe05g00034 Bma01g00666 . Sed11g0930 Cmo01g01869 Cmo09g00254 Cma12g00567 Cma05g00163 Car05g00140 Car09g00219 Cpe11g00137 Cpe02g00199 Bhi09g03276 Tan01g4734 Cmetu07g1860 . Hepe01g1799 Mch11g0329 . Cla05g02076 Cam05g2226 Cec05g2245 Cco05g2287 Clacu05g2220 Cmu05g2087 Cre05g2211 Lsi08g01495 Csa02g01926 Chy07g00160 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005600 0 1 3 4 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00970 Blo_Chr12 FPKM 18.446062 20.575897 15.601609 16.465414 28.770504 24.196222 27.451908 31.214106 29.917702 31.379547