Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00974 ATGGGAAGCTCCACCACCGGCTCCAGTGGAGACCCGCCTGTCGAGTCTGACGATAACACGGCAAAGACCGACACAGACGTCGATAGCGTTCCTTCTTCTGATTCTTGTCCCTTTGCAGTTGGAGAGAAAGTTCTTGCTTACCATAGTCTTGCCTTATACGATGCCAAGGTAGTAACTTTCTCTTCTTCTTTCGCCTTCATTCTCTTCTCCATTTTCAAAAGGTGGGACGAATGGGCAGGCATTGACCGCTTGCTCAAGTATACCGAAGAAAATGTGCAGAAACAACATGCCCTGAATATTAAGCTGGGAACTGACAAGAATGTGAAGCTAGGAAGAGCAATGCATATAAAGCCAAAGAGTTCTAATGTTGGAAGAGGGAAGAAACGAAGGAGCGATTCTGTCGAGGAAAAAAGTGGGTTGCCCATGGAAAAGCTTCTGAACATTCAAATTCCACTTACTCTAAAGAAGCAGTTAGTTGATGATTGTGAATTTATCACTCATCTTGGGAAGCTTGTCAAGCTTCCCCGCGTCCCTAACGTTGATGATATTCTGAAGAAATATCTCGATTACAGGTTGAAAAAGGATGGAATGAGAGACGAATCGGTAGAAGAAGTAGTGAAAGGATTGTGCTGTTACTTTGAGAAAGCATTGCCTGCCATGCTTTTATACAAAAGCGAACGACCGCAGTTTGAGGAAGTAATTACAGAAGAGGTCTTGCCTTCGACCGTGTATGGGGCTGAACATCTGCTACGTCTCTTTGTTAGGCTGCCGGAATTATTGTTCTATGCAAAAATTGACGAGGAGACGTTGACCGAGTTGCGACAGAAATTAGTAGACTTTCTCAAATTTTTGCAGAAACATCAGACGGCATTCTTCCTCTCGTCTTACCATATACCTGAAGATATTGAAACCAGCACCAACAAACAAAGTTTTGAACCAGAAAACGTTGAAAGTCGAGCCATCGTTTGGATGGCCAACCGTGACCACCCAGTCAATGGAAAGCAATCAAAGCTTGCGATCCTCATAACTGGGAGTGTCATCCTCTCTGATGCTGGTAAATTTGTTGTTTGGGAGACAAACTCAGCCTCAGTGTCCTCCGTACAGTTATATCTCCATGATTCCGGCAATCTGGTTCTTGCGTGGGAGGGAGATTCTCTCTGGCAAAGCTTTGATTGGCCGACAGACACCCGTTTACCCCTTCAACCTCTAACCAAATACACACAGCTTGTTTCGTCAAGAAGCAAGAGCAACCACCATCTGGGCTGTACCAGTTCTTCGACAACGACAACGATAACATCACCCTCCGCCTCATCTTCCACACCCCTGCTATTTCCAGCGTTTATTGTTGGTGACCCGAAAGAACCGAACCCAATTGAGTGCGTCCATGCTGGCGAAAGTTGTGGGGGAGAGGAGGATGGTGACGTGGATGAGAGGAACGGAGATTACGATGGGGAAAAAGATGGAAACTTTGGTTAA 1476 45.6 MGSSTTGSSGDPPVESDDNTAKTDTDVDSVPSSDSCPFAVGEKVLAYHSLALYDAKVVTFSSSFAFILFSIFKRWDEWAGIDRLLKYTEENVQKQHALNIKLGTDKNVKLGRAMHIKPKSSNVGRGKKRRSDSVEEKSGLPMEKLLNIQIPLTLKKQLVDDCEFITHLGKLVKLPRVPNVDDILKKYLDYRLKKDGMRDESVEEVVKGLCCYFEKALPAMLLYKSERPQFEEVITEEVLPSTVYGAEHLLRLFVRLPELLFYAKIDEETLTELRQKLVDFLKFLQKHQTAFFLSSYHIPEDIETSTNKQSFEPENVESRAIVWMANRDHPVNGKQSKLAILITGSVILSDAGKFVVWETNSASVSSVQLYLHDSGNLVLAWEGDSLWQSFDWPTDTRLPLQPLTKYTQLVSSRSKSNHHLGCTSSSTTTTITSPSASSSTPLLFPAFIVGDPKEPNPIECVHAGESCGGEEDGDVDERNGDYDGEKDGNFG 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27801689 27805387 - BLOR04993 Blo12g00974 68235

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00974 491 MobiDBLite consensus disorder prediction 1 35 - -
Blo12g00974 491 Gene3D - 309 443 - -
Blo12g00974 491 SMART blect_4 295 393 IPR001480 -
Blo12g00974 491 MobiDBLite consensus disorder prediction 455 491 - -
Blo12g00974 491 ProSiteProfiles MRG domain profile. 142 309 IPR026541 -
Blo12g00974 491 ProSiteProfiles Bulb-type lectin domain profile. 275 392 IPR001480 -
Blo12g00974 491 MobiDBLite consensus disorder prediction 416 438 - -
Blo12g00974 491 SUPERFAMILY Chromo domain-like 36 166 IPR016197 -
Blo12g00974 491 MobiDBLite consensus disorder prediction 1 16 - -
Blo12g00974 491 Gene3D - 28 103 - -
Blo12g00974 491 SUPERFAMILY alpha-D-mannose-specific plant lectins 321 408 IPR036426 -
Blo12g00974 491 PANTHER MORTALITY FACTOR 4-LIKE PROTEIN 11 309 IPR008676 GO:0005634|GO:0006325|GO:0006355
Blo12g00974 491 Gene3D MRG domain 142 308 IPR038217 -
Blo12g00974 491 Pfam D-mannose binding lectin 321 403 IPR001480 -
Blo12g00974 491 MobiDBLite consensus disorder prediction 118 137 - -
Blo12g00974 491 Pfam MRG 127 296 IPR026541 -
Blo12g00974 491 PANTHER PROTEIN MRG1-LIKE ISOFORM X1 11 309 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00974 K11339 MORF4L1, MRG15, EAF3; mortality factor 4-like protein 1 - jre:109020308 375.555
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo05g00632 Blo-Chr5:19512301 Blo12g00974 Blo-Chr12:27801689 4.69E-72 dispersed
Blo05g00633 Blo-Chr5:19526541 Blo12g00974 Blo-Chr12:27801689 1.28E-13 dispersed
Blo12g00974 Blo-Chr12:27801689 Blo13g00388 Blo-Chr13:22932953 1.11E-12 dispersed
Blo12g00974 Blo-Chr12:27801689 Blo06g00618 Blo-Chr6:29105155 4.29E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g712 . Blo12g00974 . . Bpe02g00441 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001712 2 6 2 2 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 2 2 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00974 Blo_Chr12 FPKM 9.100894 10.374719 7.81084 8.429014 8.915775 7.849 9.224413 13.881295 11.076846 11.824769