Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00977 ATGTTAACAGTTTCTGTGAGTATCCGGTATGGATTCTACGGCGATTCTCGCATGGTTCTTGGACCGAGCTCGTCGAGGCTGATGAGGGCGAGCTCCATTTTTGTAGAACATGTGGAAATTAGAGACGATAACTGCAAAGGGATGCAGCTTTATTCATTCTCCGAGAAGCCTGAATTGACTTTGGAAACGAATTGGAGCGTTTCGAATTTCTTGATCGTTGCATCCTACGGCCGAAAGGGTTTTTCCTTGTGGCTAAACAGGGGTTCGAAGATAAGTATGAGATGGGAAACTCATAGGAGCGCTTTGAACCAGCTTCAAGTTCTGATGATCAAAGGAGATCGAAAACACGAAACGTTGTTACCAACATTCACTGGTTCTCCGTCCGCTGAGCCACTCGAAGGCAGGGAGGCAGAATTCGTGATCGAGGAGGATGATAAATACTTTTTAGGGTTCGTCAACAGCAACGGGAAAAGCATAATCATGACACTAAGCCTAAATGTTTCGTCAAAGAGTTACGACATTTCTCGTGCGAATAGTATCTGCTCTGCGACGAAGGGCTCTTGCAAGCTCAACCTGCAATTTCCTTCAACTCAGTACGTCGTACTAACAACTCCCGACGATGGGGATATTGGAGGATGGTATGTCGAGCTTTCTTTCGTAGCTCGAGTTGTGACTTACATCGCAATTCTAGGATTAATCATGATTGTCGTGTTTTTAATATTGAAGTATCTCGGAGCATGCGATACCCATAGTAGAACTGCTTTCGTAGAAACAACTCCCCCAGAAATAAGAGTATCAGAGACAACACCTATGTTGCCGGAAAAGCCAACCTGTCATACATACGGGACGGGTGATGACGACGAAGAATCTGGTGGGTCGAGTAGTTCATCGGAGGAGTTATATGATGAAAAATTGTGCGTGATTTGCTACGACGAGCAGCGAAATTGCTTCTTCGTTCCCTGCGGTCACTGTGCAACATGTTACGATTGTGCACAGAGAATCCGTGGTTTCTATCTTCTCCGTCGAGATCTTGCTTGGCTCTTTTCTGGTTCAATTCCCATAGCCTTCAAACTTGATCCCACTGCAAGAATGAAGGACGACGAAATCGTACCGCTTTACATATCAGATCAGACCAGTCGCAGGGATCGAAAAGGCTATAAATAA 1164 45.19 MLTVSVSIRYGFYGDSRMVLGPSSSRLMRASSIFVEHVEIRDDNCKGMQLYSFSEKPELTLETNWSVSNFLIVASYGRKGFSLWLNRGSKISMRWETHRSALNQLQVLMIKGDRKHETLLPTFTGSPSAEPLEGREAEFVIEEDDKYFLGFVNSNGKSIIMTLSLNVSSKSYDISRANSICSATKGSCKLNLQFPSTQYVVLTTPDDGDIGGWYVELSFVARVVTYIAILGLIMIVVFLILKYLGACDTHSRTAFVETTPPEIRVSETTPMLPEKPTCHTYGTGDDDEESGGSSSSSEELYDEKLCVICYDEQRNCFFVPCGHCATCYDCAQRIRGFYLLRRDLAWLFSGSIPIAFKLDPTARMKDDEIVPLYISDQTSRRDRKGYK 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27823320 27826736 + BLOR04996 Blo12g00977 68238

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00977 387 Pfam Zinc finger, C3HC4 type (RING finger) 303 334 - -
Blo12g00977 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 349 IPR013083 -
Blo12g00977 387 Pfam Domain of unknown function (DUF4793) 138 239 IPR032010 -
Blo12g00977 387 Pfam Domain of unknown function (DUF4792) 48 114 IPR032008 -
Blo12g00977 387 PANTHER OS05G0521000 PROTEIN 2 334 IPR044586 GO:0004842
Blo12g00977 387 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 334 - -
Blo12g00977 387 MobiDBLite consensus disorder prediction 266 297 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00977 - - - pop:18104819 457.218
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00977 Blo-Chr12:27823320 Blo13g01041 Blo-Chr13:32746434 1.30E-28 dispersed
Blo12g00977 Blo-Chr12:27823320 Blo01g01058 Blo-Chr1:35572792 1.07E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g688 . Blo12g00977 . Bda03g00193 . . Bma04g00146 . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1603 Cone7ag1347 . Cone20ag0218 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015386 2 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0 0 2 12
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00977 Blo_Chr12 FPKM 15.29415 15.501021 12.743537 13.440797 19.736084 21.538847 21.295725 17.618088 18.129454 19.074564