Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00978 ATGATCGATCAATTTCAACTAGACGATTTGAAGGATGAGGAGGGAGAAGAAGAGGCAAATCGTCTTTTGAAGTTCAAATCCGCAACACCTTCATCGTTGTCGTTGTCTTCTTCATTGGACGACGACGATGATGAGGAAGCAGCATTCGAGGCGAGAGAGAAGGTTCTGGTTGCAGATTTGAACTCAGACGACGGCGATGATTCGACCACGTTACCTCCGTTTTCGTGGAAGAAGCTCTGGTTGTTTACAGGCCCAGGGTTTTTGATGAGCATAGCGTTCTTGGATCCGGGGAATTTGGAAGGGGACCTTCAGGCAGGTGCTATTGCAGGCTACTCATTGCTTTGGCTATTGATGTGGGCGACGGCTATGGGGCTGCTGATCCAGCTCTTGTCGGCGAGAGTCGGCGTCGCCACGGGGCGGCACTTAGCCGAGCTCTGCAGGGAAGAGTATCCAAACTGGGCAAGATATATTCTATGGTGCATGGCTGAGATAGCCTTGATTGGTGCTGATATTCAGGAAGTCATTGGAAGTGCGATAGCTATCCAGATTCTCAGCCATGGCGTTCTCCCTCTCTGGGCTGGCGTTATCATTACAGCATCCGATTGTTTCCTATTTTTATTTCTGGAGAATTACGGGGTGCGAAAGTTAGAAGCTGTTTTCGCCGTCCTAATTGCAACCATGGCGCTATCTTTCGCCTGGATGTTCGGCGATGCAAATCCTAACGGAAAAGAGCTCTTGACGGGTGTTTTGATTCCAAGACTTGGCTCAAAAACAATTCGACAAGCTGTTGGGGTCGTCGGCTGCGTTATAATGCCTCATAACGTATTTTTGCATTCTGCTTTAGTACAATCGAGGAATATCGATCCCAATAAAAAGGGGAGAGTGCAAGAAGCTCTCAACTATTACTCGATCGAGTCATCAGTCGCGCTTTTCATATCGTTCGTGATCAATTTGTTTGTCACAACGGTGTTTGCCAAGGGATTTTACGGGTCTCAACAAGCCAACAGTATAGGACTTGTCAATGCCGGGCAGTATCTTCAGCAGAAATACGGTGGAGGGCTATTTCCAATACTTTACATTTGGGGTATTGGCTTGTTAGCTGCCGGGCAGAGTAGCACAATTACCGGAACATATGCCGGACAGTTTATAATGGGAGGTTTTCTTAACCTCCGGTTGAAGAAATGGCTGAGGGCGTTGATTACACGAAGCTTTGCGATCGTTCCAACCATGGTCGTTGCTCTCGTGTTTAATACATCAGAGGCTTCGTTAGACGTCTTAAACGAATGGCTCAATGTGCTTCAGTCCATACAAATTCCCTTTGCTCTCATTCCTCTTCTTACCTTGGTGTCCAGAGAGCAGATCATGGGAGTCTTCAAAATCAGTATTCTTCTCGAGAGGGCGGCATGGACGGTGGCTGCATTAGTGATGATAATCAATGCATATCTGCTGTTAGATTTTTTTATCTCTGAAGTTAGAGGAATTCTTTTCGGGTTGATCGTCTCGTTGGGCACGATTGTGTATGCATCGTTCATCGTTTATCTAATTTCGTTTGGCGGGGCTCCTCCTTCGACCTGGTTCAATGCAATGGTGAAGAAAGTGAGGAATGGTGGAAGTGGCGTCTGA 1623 47.01 MIDQFQLDDLKDEEGEEEANRLLKFKSATPSSLSLSSSLDDDDDEEAAFEAREKVLVADLNSDDGDDSTTLPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQLLSARVGVATGRHLAELCREEYPNWARYILWCMAEIALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITASDCFLFLFLENYGVRKLEAVFAVLIATMALSFAWMFGDANPNGKELLTGVLIPRLGSKTIRQAVGVVGCVIMPHNVFLHSALVQSRNIDPNKKGRVQEALNYYSIESSVALFISFVINLFVTTVFAKGFYGSQQANSIGLVNAGQYLQQKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSFAIVPTMVVALVFNTSEASLDVLNEWLNVLQSIQIPFALIPLLTLVSREQIMGVFKISILLERAAWTVAALVMIINAYLLLDFFISEVRGILFGLIVSLGTIVYASFIVYLISFGGAPPSTWFNAMVKKVRNGGSGV 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27826943 27828974 + BLOR04997 Blo12g00978 68239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00978 540 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 77 455 IPR001046 GO:0016020|GO:0030001|GO:0046873
Blo12g00978 540 Hamap Divalent metal cation transporter MntH [mntH]. 65 487 IPR001046 GO:0016020|GO:0030001|GO:0046873
Blo12g00978 540 Pfam Natural resistance-associated macrophage protein 100 461 IPR001046 GO:0016020|GO:0030001|GO:0046873
Blo12g00978 540 PANTHER BNAC08G04640D PROTEIN 37 530 - -
Blo12g00978 540 PRINTS Natural resistance-associated macrophage protein signature 369 388 IPR001046 GO:0016020|GO:0030001|GO:0046873
Blo12g00978 540 PRINTS Natural resistance-associated macrophage protein signature 397 414 IPR001046 GO:0016020|GO:0030001|GO:0046873
Blo12g00978 540 PRINTS Natural resistance-associated macrophage protein signature 431 450 IPR001046 GO:0016020|GO:0030001|GO:0046873
Blo12g00978 540 PRINTS Natural resistance-associated macrophage protein signature 188 207 IPR001046 GO:0016020|GO:0030001|GO:0046873
Blo12g00978 540 PRINTS Natural resistance-associated macrophage protein signature 262 285 IPR001046 GO:0016020|GO:0030001|GO:0046873
Blo12g00978 540 PRINTS Natural resistance-associated macrophage protein signature 158 184 IPR001046 GO:0016020|GO:0030001|GO:0046873
Blo12g00978 540 PRINTS Natural resistance-associated macrophage protein signature 213 234 IPR001046 GO:0016020|GO:0030001|GO:0046873
Blo12g00978 540 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 37 530 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Blo01g01505 Blo12g00978 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00647 Blo-Chr6:29455010 Blo12g00978 Blo-Chr12:27826943 8.63E-109 dispersed
Blo07g01398 Blo-Chr7:34050954 Blo12g00978 Blo-Chr12:27826943 3.53E-25 dispersed
Blo12g00978 Blo-Chr12:27826943 Blo16g00314 Blo-Chr16:7964685 2.56E-97 dispersed
Blo01g01505 Blo-Chr1:54628306 Blo12g00978 Blo-Chr12:27826943 0 wgd
Blo12g00978 Blo-Chr12:27826943 Blo16g00367 Blo-Chr16:12116155 1.22E-126 wgd
Blo12g00978 Blo-Chr12:27826943 Blo04g01073 Blo-Chr4:15606691 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00978 K21398 - mnt:21393551 840.876