Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00979 ATGGAGAATCACGACGACCTATTCTCGGCCCAAACGGACTATTTTCACGATCCTGACTACAGGTTGGAGGAATTTGGTGCCGCCAGCAATCCTCGTCAGCGCCCTCTTTCTCTTTGTAATCAATGGGAAAGTTCGAGAATGAATTCTCTTCAAGATAGTCATGTTGATCAAATGCTAGCTGGTTTCGCTCGCCTTCGTCTCTCCTCTGATAGTGACCCGCATCTGTGTTCTGCTTCCCACAGCGATGCTGGCTTCGGATGGAGCCGTTCGAACCTGGTTAACGACCAACTTTATTTTCCATGTTATGCAGAAGAGATAATGCGTCAAAGCAATGTTGAGTTTCATAGAATAAGGTCGAATAATGGCGATGTTTCTAATACTGGGAACCTTGGGCACCTGGATTATAGAGTAGGTTTTCATTCTGAGGGATTGAATGGACTATATCAGACGTCTAGTACTGTTCAACAGCGTGCGATTAACGAGGGGCTTTTTGCTTATGAGAGAAGGCGGTTTGGACGTAGAGATAATATAAATGGAGAACTCCCGGTCTTGCCATTTTCAAACCGTAATGGATTATTGTCTGATCTTTCTCGCCATTATAACGACGCAGTGGACCATTCAGGAAAATTTTCAAGCACTAGGTGGTCTGCCTTGAATAGTAGACATCCTCATAGGTTACAGGAGCCTCTGAGTTATCTTTCTGTGGAAGCATTTCAAGGAAAACTAGTCTCGTTGGCAAAAGATCAATCCGGGTGTCGATTTTTGCAGAAGAAATTGGAGGATGCGACTGAAAGTGAAATCAATATGATCTTCTTAGAGGTGATAGAACATGTGCGCGAACTGATGCTTGATCCATTTGGAAATTATGTTGTTCAGAAACTTGTAGAGGTATGTGGGGAAGAGCAGAGGACGCAGATTCTTCTGATGGTGACAAGAAGGGATTTAGAACTTGCTCGTATTTGCCTTGATATCCATGGAACTCGCTCTGTACAGAAACTATTGGAACATCTAACAACCCAAGAACAGATTTCTATAGTGGTCTCAGCTGTCAGAGCTGATGCGTTTGCATTGTCTACGGACATGAATGGTCATCACGTGATTCAGCATTGCCTAAAACATTTCTCTGCTGAGGACAATAAGTATATTTTGAACGAGGTGGTGAATAACTGTTTTGCCATTGCTACCGATAAAAGCGGATGTTGTGTCCTGCAGCAATGTGTCGATTACTCTAATGGAGAAATTAGAAAGCGTCTGATCGATGAGATTTTAGCAAATTCTGTACATCTATCAGAAGATCCCTACGGTAACTATGTGGTACAACATCTACTTGACCTGAGGATACCACAAACGACATCAAATCTTGTAAGAAAACTCGAAGGACATTATCTGGTTCTCTCGTGCAACAAGTATGGCAGTAATGTTGTGCAGAGATGCTTGAAGAAATCAGGAGGAGAAGACTCTACGCTTATTATCAACGAGCTGCTTTTAAGTCCACATGTTTCTATGTTGCTGCTTCATCCTTATGGAAACTATGTAATCCAATCTGCATTGTTAGTGTCTAAGCTCTCTGCAAAACCTGATTCGAAAATATGCCTCCATGATGCGAGACAATCTCTTCGGGAAGAAGTTGCTGGCATGGATCAGCAAGCGGGGGATGGGACGGTTTTAGATGTGTACAAAACCCACGAGAAAGTCTTGGATTGTCGTCTTCTTTAA 1716 42.83 MENHDDLFSAQTDYFHDPDYRLEEFGAASNPRQRPLSLCNQWESSRMNSLQDSHVDQMLAGFARLRLSSDSDPHLCSASHSDAGFGWSRSNLVNDQLYFPCYAEEIMRQSNVEFHRIRSNNGDVSNTGNLGHLDYRVGFHSEGLNGLYQTSSTVQQRAINEGLFAYERRRFGRRDNINGELPVLPFSNRNGLLSDLSRHYNDAVDHSGKFSSTRWSALNSRHPHRLQEPLSYLSVEAFQGKLVSLAKDQSGCRFLQKKLEDATESEINMIFLEVIEHVRELMLDPFGNYVVQKLVEVCGEEQRTQILLMVTRRDLELARICLDIHGTRSVQKLLEHLTTQEQISIVVSAVRADAFALSTDMNGHHVIQHCLKHFSAEDNKYILNEVVNNCFAIATDKSGCCVLQQCVDYSNGEIRKRLIDEILANSVHLSEDPYGNYVVQHLLDLRIPQTTSNLVRKLEGHYLVLSCNKYGSNVVQRCLKKSGGEDSTLIINELLLSPHVSMLLLHPYGNYVIQSALLVSKLSAKPDSKICLHDARQSLREEVAGMDQQAGDGTVLDVYKTHEKVLDCRLL 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27829622 27832203 + BLOR04998 Blo12g00979 68240

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00979 571 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 132 523 - -
Blo12g00979 571 CDD Pumilio 240 525 IPR033712 GO:0003723
Blo12g00979 571 ProSiteProfiles Pumilio RNA-binding repeat profile. 421 456 IPR001313 GO:0003723
Blo12g00979 571 PANTHER PUMILIO HOMOLOG 15 132 523 - -
Blo12g00979 571 ProSiteProfiles Pumilio RNA-binding repeat profile. 273 308 IPR001313 GO:0003723
Blo12g00979 571 SUPERFAMILY ARM repeat 235 521 IPR016024 -
Blo12g00979 571 ProSiteProfiles Pumilio RNA-binding repeat profile. 385 420 IPR001313 GO:0003723
Blo12g00979 571 ProSiteProfiles Pumilio RNA-binding repeat profile. 457 492 IPR001313 GO:0003723
Blo12g00979 571 ProSiteProfiles Pumilio RNA-binding repeat profile. 237 272 IPR001313 GO:0003723
Blo12g00979 571 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 213 562 IPR033133 GO:0003723
Blo12g00979 571 SMART pum_5 385 420 IPR001313 GO:0003723
Blo12g00979 571 SMART pum_5 273 308 IPR001313 GO:0003723
Blo12g00979 571 SMART pum_5 312 347 IPR001313 GO:0003723
Blo12g00979 571 SMART pum_5 495 530 IPR001313 GO:0003723
Blo12g00979 571 SMART pum_5 421 456 IPR001313 GO:0003723
Blo12g00979 571 SMART pum_5 349 384 IPR001313 GO:0003723
Blo12g00979 571 SMART pum_5 457 492 IPR001313 GO:0003723
Blo12g00979 571 SMART pum_5 237 272 IPR001313 GO:0003723
Blo12g00979 571 ProSiteProfiles Pumilio RNA-binding repeat profile. 309 348 IPR001313 GO:0003723
Blo12g00979 571 Gene3D - 224 548 IPR011989 -
Blo12g00979 571 Pfam Pumilio-family RNA binding repeat 277 307 IPR001313 GO:0003723
Blo12g00979 571 Pfam Pumilio-family RNA binding repeat 389 423 IPR001313 GO:0003723
Blo12g00979 571 Pfam Pumilio-family RNA binding repeat 499 515 IPR001313 GO:0003723
Blo12g00979 571 Pfam Pumilio-family RNA binding repeat 355 386 IPR001313 GO:0003723
Blo12g00979 571 Pfam Pumilio-family RNA binding repeat 319 348 IPR001313 GO:0003723
Blo12g00979 571 Pfam Pumilio-family RNA binding repeat 461 495 IPR001313 GO:0003723
Blo12g00979 571 Pfam Pumilio-family RNA binding repeat 242 275 IPR001313 GO:0003723
Blo12g00979 571 Pfam Pumilio-family RNA binding repeat 427 444 IPR001313 GO:0003723
Blo12g00979 571 ProSiteProfiles Pumilio RNA-binding repeat profile. 349 384 IPR001313 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00979 - - - zju:107420560 454.907
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01504 Blo12g00979 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00979 Blo-Chr12:27829622 Blo13g00266 Blo-Chr13:12733220 2.20E-85 dispersed
Blo01g01504 Blo-Chr1:54621951 Blo12g00979 Blo-Chr12:27829622 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g683 Blo01g01504 Blo12g00979 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024807 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2