Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00980 ATGGCTTCGGCCACGGCTCGCTTTTATTCTTATCCACTAATCTGTTCTTTAATTGGATTCAATCTCGCCGCCGTGATTTTCTCAGCCGCTGATGGCTCTCCAAGCTCCGATCATCGACGGCGGCCGATGATTCTTCCTCTCTATCTCTCATCGCCTAACTCTACTCGCCACTTCCGCGTATTGGACGGTGATCGTCGTCTCCGACATCTTCAGACGTTGGGACGGCCGAACACGCATACCGCTCGCATGAGGCTGCACGACGACCTGCTTACCAACGGTTATTATACCACGCGGTTATGGATTGGGACGCCTCCGCAGCAATTCGCGCTTATTGTTGATACGGGGAGTACTGTGACGTACGTTCCGTGCTCTGACTGTGAACATTGTGGGAAGCATCAGGACCCAAGATTTCAACCAGAATTGTCAACCACCTACAAACCTGTAAAGTGCAATATCAACTGTAATTGTGATGATAAAGGAAATCAATGTATTTATGAAAGACGGTATGCTGAAATGAGCACTAGCAGTGGTGTTCTAGCTGATGACATCATTTCATTTGGCAATGAAAGTGAACTTGTACCCCAGCGTGCTATCTTTGGTTGTGAAAATGTTGAAACTGGTGATATTTACAGCCAACGTGCTGATGGGATAATGGGTTTAGGTCGTGGCACACTTAGTGTGATGGATCAACTTGTCAATAAAGGTGTTATTAGTAATTCCTTCTCTTTGTGTTACGGTGGGATGGATTTTGGCGGTGGTGCAATGGTTCTTGGCGGGATCACTCCACCCCCTGGCATGGTATTTACTCATTCAGATCCTTCTCGAAGTCCATATTATAATATAGAGCTGAGGGAAATACATGTTGCTGGGAAGCCGTTGAATGTACATCCTGCCGTCTTCAATATGAAGTATGGCACTGTCTTGGACAGTGGGACTACATATGCATATTTTCCAGAACCAGCATTTGATGCATTTAAACATTCTCTAATGAAGAAAATTAGTTTTCTGAAACAAATACCTGGTCCCGATCCAAATTTTGAAGATATCTGTTTTGCTGGAGCTGGAAGGAATGTCAATCAGCTAAGGGCTGTTTTTCCAGAGATTGATATGGTATTTAACAATGGACAAAAATATTCTCTGTTTCCAGAAAACTACTTGTTCCGGCATACTAAGGTTAGTGGTGCGTATTGCCTGGGGATTTTCAAAAATGCAAATGACCATACGACTCTTTTGGGAGGTATAATTGTTCGTAACACCTTAGTGACCTATGATAGAGAGAACACTAAGGTTGGGTTTTGGAAAACCAATTGTTCTGAGCTATGGAAGACTCTCAATGATCAAACTGCTGTCCCAACCCCTTTACCAAACACTGATCAAAATACTACAGGAAGTCATCCATTGTCTCCAAGCGAACAGCCCAATACTTTATTTTCAGGGGAATTTCAGGTTGGACTTATTACGTTTGATATGGTACTTCGAGTCAACAGCTCCGTTATGAAGCCTAACTTCACCGAACTAACTGAGTTTATTGCACATTCACTCGATGTCAATATCTCACAGGTGCGGTTATTGAACTTCACTTTTAAGGGAAACGAATCCTTTATAAGATGGGGCATCTTCCCTGCTAAATCTGCTAATTACTTTTCTAATACCACTGCAACGAGCATAATTATTCGCTTGAAGGAGCATAAAATGCAGCTTCCTGAAAAGTTTGGAAGTTATCAGTTGGTTGACTTGGATATTGAGCCTCAAGTAGAGAAGAGCTGGTGGGAGCAGCACTTATGGGGAGTGACTGTTGGAGTCGTAGTAAGCTTGGTTCTTGGATTGTTTAGCTCAGAATCTCCTCGACCTCCGGATCTGCATTACCCTCCGTCGCCAGTTCCGATACACGACGGGTCCCTTCATGCACTTTACGAGCTTCCTGGTCTGGGCGAGGATGAGATCATGAATAATTCAAATGAGAATGAAGAGGGAGGCCAATCAGGCACAGTTGAGCCGGCGGAAGATCCTCAAGCGGATGATAAGAAGATAGAGGCCGAAAGAGATCGACTGTTGCAGTTTCTCTTAAACGCCGTTGAAGAGAGAAAGGATGAGATCTTTACAGTGAGAGACACAAAAGAGAAAAAGCCCAAGACACCTATGACATCAGAACGGGAAAGTCAACCATTAAGAAGCAGAGTTGAAGCTGAGATTATAAAAATAAAACTCCAAGAGGGGTCATCACGATCAAATAATGAAGTTGCATTGACGTTTAGGAAGAGAAAACGAAAACAGGAGCACCCCTCTAGGGCTCCGATGGGCGACGGTCTGTACGAGATTTTAGAAGCTAAAACCTGGGCACAGCCAGCTCCTTCGAGGGCTTCATCACCAGAGATGGAGTGGCCAAAGAAAGCAGAGGATAACAAGAAGAAGAAGAAAGAGACAGAGAAGTACAACTTTCCAAACTTTGCATTGTCGCTGGGGACGAGTGAGGTTGAGAAAGATTTCATGGAGGTGCTAGGGAAGAAACCTAGAAGACGACCAACGAGGAGGCCACGAGATGTGCAGAATGAGTTGAATACGATTTTTCCTGGTTCATCGCTGGAGAAGATAACAGCAAAGAGATACTCCGTTCCCGAATAG 2622 44.36 MASATARFYSYPLICSLIGFNLAAVIFSAADGSPSSDHRRRPMILPLYLSSPNSTRHFRVLDGDRRLRHLQTLGRPNTHTARMRLHDDLLTNGYYTTRLWIGTPPQQFALIVDTGSTVTYVPCSDCEHCGKHQDPRFQPELSTTYKPVKCNINCNCDDKGNQCIYERRYAEMSTSSGVLADDIISFGNESELVPQRAIFGCENVETGDIYSQRADGIMGLGRGTLSVMDQLVNKGVISNSFSLCYGGMDFGGGAMVLGGITPPPGMVFTHSDPSRSPYYNIELREIHVAGKPLNVHPAVFNMKYGTVLDSGTTYAYFPEPAFDAFKHSLMKKISFLKQIPGPDPNFEDICFAGAGRNVNQLRAVFPEIDMVFNNGQKYSLFPENYLFRHTKVSGAYCLGIFKNANDHTTLLGGIIVRNTLVTYDRENTKVGFWKTNCSELWKTLNDQTAVPTPLPNTDQNTTGSHPLSPSEQPNTLFSGEFQVGLITFDMVLRVNSSVMKPNFTELTEFIAHSLDVNISQVRLLNFTFKGNESFIRWGIFPAKSANYFSNTTATSIIIRLKEHKMQLPEKFGSYQLVDLDIEPQVEKSWWEQHLWGVTVGVVVSLVLGLFSSESPRPPDLHYPPSPVPIHDGSLHALYELPGLGEDEIMNNSNENEEGGQSGTVEPAEDPQADDKKIEAERDRLLQFLLNAVEERKDEIFTVRDTKEKKPKTPMTSERESQPLRSRVEAEIIKIKLQEGSSRSNNEVALTFRKRKRKQEHPSRAPMGDGLYEILEAKTWAQPAPSRASSPEMEWPKKAEDNKKKKKETEKYNFPNFALSLGTSEVEKDFMEVLGKKPRRRPTRRPRDVQNELNTIFPGSSLEKITAKRYSVPE 873
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27832723 27840573 + BLOR04999 Blo12g00980 68241

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00980 873 SUPERFAMILY Acid proteases 91 442 IPR021109 -
Blo12g00980 873 ProSiteProfiles Peptidase family A1 domain profile. 95 433 IPR033121 -
Blo12g00980 873 Pfam Xylanase inhibitor C-terminal 279 432 IPR032799 -
Blo12g00980 873 Gene3D Acid Proteases 266 443 IPR021109 -
Blo12g00980 873 Pfam Protein of unknown function (DUF1639) 822 869 IPR012438 -
Blo12g00980 873 CDD pepsin_A_like_plant 94 437 IPR034161 -
Blo12g00980 873 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 25 483 - -
Blo12g00980 873 MobiDBLite consensus disorder prediction 775 809 - -
Blo12g00980 873 MobiDBLite consensus disorder prediction 704 724 - -
Blo12g00980 873 MobiDBLite consensus disorder prediction 832 854 - -
Blo12g00980 873 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 110 121 IPR001969 GO:0004190|GO:0006508
Blo12g00980 873 MobiDBLite consensus disorder prediction 645 673 - -
Blo12g00980 873 MobiDBLite consensus disorder prediction 792 809 - -
Blo12g00980 873 PRINTS Pepsin (A1) aspartic protease family signature 101 121 IPR001461 GO:0004190|GO:0006508
Blo12g00980 873 PRINTS Pepsin (A1) aspartic protease family signature 306 317 IPR001461 GO:0004190|GO:0006508
Blo12g00980 873 PRINTS Pepsin (A1) aspartic protease family signature 409 424 IPR001461 GO:0004190|GO:0006508
Blo12g00980 873 Gene3D Acid Proteases 76 258 IPR021109 -
Blo12g00980 873 PANTHER ASPARTYL PROTEASES 25 483 IPR001461 GO:0004190|GO:0006508
Blo12g00980 873 Pfam Xylanase inhibitor N-terminal 95 259 IPR032861 -
Blo12g00980 873 MobiDBLite consensus disorder prediction 449 471 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00980 - - - csv:101208466 875.544
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00178 Blo-Chr6:7401483 Blo12g00980 Blo-Chr12:27832723 3.24E-35 dispersed
Blo12g00980 Blo-Chr12:27832723 Blo14g00211 Blo-Chr14:1824159 6.50E-51 dispersed
Blo12g00980 Blo-Chr12:27832723 Blo16g00365 Blo-Chr16:12041215 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g682 . Blo12g00980 . Bda03g00191 . Bpe04g00164 . . . . . Cma09g00272 . . . . . . . . . . . . . . . . . . . . . Cone17ag0871 Cone20ag0219 . Csa04g02461 . . . . . . . . . . . . Cmo09g00268 . . . Car09g00227 . . Bhi09g03250 . . . Hepe01g1811 Mch11g0344 . Cla05g02090 . . . . . . . . Chy07g00175 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002183 1 4 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 1 3 2 2 2 2 1 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00980 Blo_Chr12 FPKM 70.658379 72.27597 1.012206 1.343029 2.929104 3.505628 3.855465 0.117962 0.0 0.0