Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00986 ATGGAGGATCATTTGGGCCTTCTTTGTGCAGAAGGTGGAGATTTTGTTTACAGAGAGGTTACTGATGATGATAGCACATTCGGCCGCTTCGAGAGAGATTCTGCGTTTGACGATGAGTACGTCGGGATACTATTTGAGAGAGAAATTGATTTTGGATTCAGGAACGATGAATCTTTCGCGTTTGACGACTGGATTAAATGTGCTCGTCTGGAAGCCATCAACTGGGTTCTTAAAACTAGAGGTGTGTTTGGATTCAAATTTCAAACAGCTTATTTGTCCCTGACATACTTGGATCGTCTCCTTTCGATAATACCCATCCCTAATGAAAAATTATGGGTAATTAGAGTGCTATCAGTAGCCTGCCTTTCCTTGGCTGCTAAAATGGAGGAATTCGAGGTTCCTGGACTGCCCCTAATTCAACTAGAAGATTACAATTTTGAGAGCAAAACAATAAAGAGAATGGAGTTTTTGGTATTATACACATTGGAATGGAAGATGAGCCCAATAACTCCATTTACTTTTATTCATTACTTCATTTCAAAACTCAGCCAAGAATCCACACCAAGAAATTTACATTCTGAGACAGTTCGACTCATCTTTGCTGCAATAGGAGAAATCAATTTGATGAATTATCGACCATCCGTTCTAGCTGTTGCTGCAACAATGGTGGAAATGGATCAGACTCTAACAAGAGAAGCATGGGAGTTGAAAATTAACTCCATTTTGCACCGCGAATTCCTTGATATGGAAAGTGTGTTTTCAGCCTACAAAATGATACAGAAAGTGAAGGAGGAGAGACTGAAGAAAGATCCAGGGCCTTCTACCTCGCCCGATTTATTCTCGAACCACGACAGAAAATTTTCACTCACTACTGCTCGTTGCTCCAAGAGAAGACTAGAATTCAAGAACAATGATCGTGATCACGGCAAAGATGATCGGCAGGGACATGGTTAG 954 40.88 MEDHLGLLCAEGGDFVYREVTDDDSTFGRFERDSAFDDEYVGILFEREIDFGFRNDESFAFDDWIKCARLEAINWVLKTRGVFGFKFQTAYLSLTYLDRLLSIIPIPNEKLWVIRVLSVACLSLAAKMEEFEVPGLPLIQLEDYNFESKTIKRMEFLVLYTLEWKMSPITPFTFIHYFISKLSQESTPRNLHSETVRLIFAAIGEINLMNYRPSVLAVAATMVEMDQTLTREAWELKINSILHREFLDMESVFSAYKMIQKVKEERLKKDPGPSTSPDLFSNHDRKFSLTTARCSKRRLEFKNNDRDHGKDDRQGHG 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27904925 27906241 + BLOR05005 Blo12g00986 68247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00986 317 MobiDBLite consensus disorder prediction 298 317 - -
Blo12g00986 317 PANTHER CYCLIN-D5-1 37 280 - -
Blo12g00986 317 ProSitePatterns Cyclins signature. 69 100 IPR006671 -
Blo12g00986 317 Gene3D - 168 242 - -
Blo12g00986 317 CDD CYCLIN 69 159 IPR013763 -
Blo12g00986 317 SUPERFAMILY Cyclin-like 35 166 IPR036915 -
Blo12g00986 317 Pfam Cyclin, N-terminal domain 68 167 IPR006671 -
Blo12g00986 317 Pfam Cyclin, C-terminal domain 169 263 IPR004367 -
Blo12g00986 317 SUPERFAMILY Cyclin-like 152 225 IPR036915 -
Blo12g00986 317 Gene3D - 68 167 - -
Blo12g00986 317 PANTHER CYCLINS 37 280 IPR039361 -
Blo12g00986 317 SMART cyclin_7 74 160 IPR013763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00986 K18811 CYCD5; cyclin D5, plant - jre:108983175 301.982
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01496 Blo12g00986 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00986 Blo-Chr12:27904925 Blo11g00015 Blo-Chr11:137462 1.40E-39 dispersed
Blo01g01110 Blo-Chr1:39441521 Blo12g00986 Blo-Chr12:27904925 2.68E-26 transposed
Blo05g00837 Blo-Chr5:30248677 Blo12g00986 Blo-Chr12:27904925 2.54E-70 transposed
Blo01g01496 Blo-Chr1:54484164 Blo12g00986 Blo-Chr12:27904925 1.66E-168 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g655 Blo01g01496 Blo12g00986 Bda01g00589 Bda03g00183 Bpe02g00451 . . Bma01g02248 . . Cma01g01787 Cma09g00289 Car01g01395 . . Cpe06g00199 . . . . . . . . . . . . . . . . Cone7ag1340 . . Lsi04g01489 Csa04g02476 . . . . . . . . . . . Cmo01g01845 Cmo09g00280 . . . Car09g00243 . Cpe02g00219 Bhi09g03230 . . . . . . Cla05g02105 Cam05g2257 Cec05g2278 Cco05g2318 Clacu05g2254 Cmu05g2116 Cre05g2240 . . Chy07g00188 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005430 2 2 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 2 40