Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00991 ATGCAATCACGACAGGACAATTTCCTCAATTGCTTCCACACCAGTGAACAACCTCGCAACCTCGCAACTTTCTCTGCGCTCCTTTCTCTCAAAGCAGTTTATGCTGAGAGGGATTTTCAAGAATATTTAAAGAACAATATGGTATGGAGTTGGATTTTAAATACTGCAGGTGTGTGCTTGAAGGTGAGGAACACTCCTCCAAAGTTTGCAACGCATTTTATTGCATCTCTACCCCACCTACCTACTAGAGTTATGACAAAGAGGCTCTTCACAGTCGAGAGATACGTAGGCGTGGGAGAGTCGGAGGATGTGCAGCTTTTCTACTACTGTTTCAAGTCGGAGAAAAGCCCGGAGAATGACCCTCTTCTCCTTTGGCTCGTCGGAGGTCCGGGCTGCTCTGCTATGTCTGCTATAGCTTTTGAGATAGGTCCAATAAATTATGTTATGAAGCAGTATAACGGGAGCATGCCAACCTTGGGACTGAACCCATATTCATGGACGAAGGAAGCGAGTGTACTATTCGTAGACTCCCCTGTTGGGACTGGCTTTTCATATGCAAGAACACCGAACGCTTTCCAGCCTGGAGACTTCAATCAAGTTCACCAGATTCATCAATTCCTCCGAAAGTGGTTGACTGATCATCCAGAATACATATCAAATCCTCTCTACGTCGGTGGAGATTCATATACCGGCATCCTTCTTCCGGCCGTCGTGCAAGAAATCTTAAATGGTGAGAAACCCTATGTAATTCCTGCAATTCAGGGATATTTACTTGGAAATCCAGGAACTATTTCCTCAGTTGAGTCCAATTTCTTAATCCCCTATTCTCACGGAATGGGATTAATCTCCGACGAACTGTACGAGTCACTGAAGCAGACTTGTAGAGGAGTGTTTGGAGATCTCCACCCCCTCAACAAAGAGTGTTTACAAGATCTCGACGAGTTTCGTAAGTGTATTACAGGAACTAACACTCCCCATATTTTGGAACCTTTATGTCTTTTTTATTCTCCAAAGCCGCAAAAAAGACTCGATCGAAGATCTCTGTACAACACCAATAATCTCTTCTCCGACTCCGACCCGCAGTTTCCTCCAATTACCTGCCGAAGTTATGGATATTTGCTGTGTAGATACTGGGCCAACGATCCCGATGTTCAAAAGGCTCTTCACATACGAGAGGGAAGTATAGGAGAATGGAAGCGCTGTGGGCTGGAGAGTTATCGCTACGAAATTTTGAGTAGTTTTGCGTATCATGTAAACCTTAGTGCTAAAGGAGTTCGATCGTTAGTATATAGTGGGGATCACGACATGGTAATACCATTCTTGGGCACTCAAGCGTGGATAAGGCTTTTGAACTACTCCATTGATGAAGACTGGAGGCCATGGGTGGTCAGAGGCCAAGTTGCAGGTTCAATTGACTGGAAGCCCTCCCCAGTTGTTGCCCTCGCCACCAGCGCCGATGACTCTCAAGTCGCCGCTGCCCGAGAAGACGGTTCGCTCGAGATTTGGCTCGTGTCTCCCGGCTCCGTGGGCTGGCACCATCAGATGACAATTCATGGAAATCCTAATTGTAGGATTTCATCACTCATTTGGTGTCGCGGTTGTTTCAAAGGCATGAGTTATGGTCGCTTATATTCGTCCAGCATGGATGGGTCCGTTTCCGAGTGGGATCTTTGTGATTTGAAGCAGAATACTGTGCTAGATGCTATTGGTGTCTCTATCTGGCAGATGGCTGTGGCTCCTTGTGTCAATCAGGCACTTCATGCTGTGCCCAAGACCCAAAATATGGAAAATGGGGGTTCAAATGAAAGTCATACCTATTGTAAAGATTCCAGTGAAAGCGAAGATGAAGCTGACTTAATTGGGCCTGATCACCAATCAGCTACTGATAATCTACTTGCAGCAATAGCTTGTGATGATGGTAGTGTTCGAATGTACAGTATCTCTGACCTGGATGGTTTTGTTTATACCAGATCACTGCCTAGGGTCAGTGGTCGTGTTTTAAGTGTCACATGGAGTCTTGATGCAGAAATGATATATTCAGGCAGCAGTGATGGGTTTATTAGGTGCTGGAATGCCAAATCGGGCCATGAGATCTACAGGATAACAGTAGGACTTGGAGGTTTGGGTTCTGGATCTGAACTTTGTGTTTGGTCTTTACTTTCCTTAAGATGTGGGACACTTGTAAGTGCTGACAGCAATGGAAGTGTTCAATTCTGGGACAGTCGTTATGGAACTCTTCTACAAGCACATTCTCAACACAAGGGCGATGTTAATGCTCTGGCAGCTGCTCCCAGCCACAATAAGGTGTATTCTGCTGGTTCTGATGGACAGGTTGTTCTATATAAGCTCTCAAGTGAAACAGTTGAATATGGTGATGACGAGTCTTTGTCTAAAGTGATGAAGAAATGGATCTATGTGGGTTATGTTAGAGCTCATACACATGATATTAGGGCTTTGACTGTGGCAGTACCAATCAGTAGAGATCCATTTCCAAAAGAAGAGGTGAAAAGAGTTCGTGGTAGAAAGAAGCCCATTGATTTTACATATGGTAAGTGGGCTCATTTGGGCGTTCCCATGCTAATATCAGGTGGTGATGACACAAAGCTCTTTGCTTATTCTGTGAAGGAGTTTACTAAATTTTCTCCTCATGATATTTGCCTTGCACCTCAAAGAGTTCCTATGCAACTCGTGCTCGATACAGTTTTCAATCAAACACCATTGCTGCTTGTCCAGGCCTCCCATTGTTTGGATATCATGTGTATTCGTCGGAGAGGCGGTGCCTATCCTGAGATGGCTTGTGGAACTTCTGGCGCGCATGCAAATGCTGAATTAGTTGCTCGAGTTAAGAGTAAGGGTTCTCGTAAGATCATTTGCAGCACTATTTCTAATTCAGGAAAGCTGTTTTCCTATTCTGACCACCGGAAACCCAGTCTATTTGAATTGAAGGGATCCAAAGTCACCAAACATACATGGACTGTTAATAAGAAGCAACTTCCTCGTGTACTGCCATTTGCTCATTCCATGGTCTTTACCTCTGACTCTTCCCGATTGGTGATAGCAGGGCATGATAGATTGATTTATGTTGTGGAAATTGGAAGTTTGGAAGTAATACACCGTTTCACACCATGCCAACAACTAAAAGATGAAGAACTTCCACCCAAAGAACCTCCGATAACAAAAATGTTTACCAGTTCAGATGGCCAGTGGTTAGCTGCAATTAATTGTCTTGGCGATATTTACATATTTAACTTGGAGCTACTAAGGCAGCATTGGTTTATTTCTAGACTAGATGGTGCCTCTGTTGCTGCTGGTGGGTTTCCTCAATGGAACAATAATGTGCTGGTGGTTACTACCTCTTCGAATCAGATTTATGCATTTGATGTTGAGGCCAAAAAGTTGGGTGATTGGTCACTTCGACACCCAGGTGCTCTTCCAAAGAGATTTCAAGAATTTCCAGGAGAAGTGATTGGTCTCTCGTTCCCTCATTCCACAAATACTTCTGCTGTTATTGTATACAGTTCTAGGGCAATGTGCGTGGTTGATATCGGTTTATCTGTTGATCGAGATAATGACTGCAGTCAGGATTTGGCTATGAAGAATTTAAAAAATATTTCAGTGAATGGAACACGCAAACGGATGTTGAGCGATTTACAAACTGAGAATAAACTCTCTGGTGGAAAGAATTTTGAAATTCGCTCTTTTAGAGATCCTGTTTTATTTGTTGGACACCTATCCAAAAGTTCCCTCTTGATCATAGACAAACCATGGTTGGACGTGGTTAAAAGTTTCGACAGCCAACCTGTGCACAGACATATATTTGGGACATAA 3828 43.81 MQSRQDNFLNCFHTSEQPRNLATFSALLSLKAVYAERDFQEYLKNNMVWSWILNTAGVCLKVRNTPPKFATHFIASLPHLPTRVMTKRLFTVERYVGVGESEDVQLFYYCFKSEKSPENDPLLLWLVGGPGCSAMSAIAFEIGPINYVMKQYNGSMPTLGLNPYSWTKEASVLFVDSPVGTGFSYARTPNAFQPGDFNQVHQIHQFLRKWLTDHPEYISNPLYVGGDSYTGILLPAVVQEILNGEKPYVIPAIQGYLLGNPGTISSVESNFLIPYSHGMGLISDELYESLKQTCRGVFGDLHPLNKECLQDLDEFRKCITGTNTPHILEPLCLFYSPKPQKRLDRRSLYNTNNLFSDSDPQFPPITCRSYGYLLCRYWANDPDVQKALHIREGSIGEWKRCGLESYRYEILSSFAYHVNLSAKGVRSLVYSGDHDMVIPFLGTQAWIRLLNYSIDEDWRPWVVRGQVAGSIDWKPSPVVALATSADDSQVAAAREDGSLEIWLVSPGSVGWHHQMTIHGNPNCRISSLIWCRGCFKGMSYGRLYSSSMDGSVSEWDLCDLKQNTVLDAIGVSIWQMAVAPCVNQALHAVPKTQNMENGGSNESHTYCKDSSESEDEADLIGPDHQSATDNLLAAIACDDGSVRMYSISDLDGFVYTRSLPRVSGRVLSVTWSLDAEMIYSGSSDGFIRCWNAKSGHEIYRITVGLGGLGSGSELCVWSLLSLRCGTLVSADSNGSVQFWDSRYGTLLQAHSQHKGDVNALAAAPSHNKVYSAGSDGQVVLYKLSSETVEYGDDESLSKVMKKWIYVGYVRAHTHDIRALTVAVPISRDPFPKEEVKRVRGRKKPIDFTYGKWAHLGVPMLISGGDDTKLFAYSVKEFTKFSPHDICLAPQRVPMQLVLDTVFNQTPLLLVQASHCLDIMCIRRRGGAYPEMACGTSGAHANAELVARVKSKGSRKIICSTISNSGKLFSYSDHRKPSLFELKGSKVTKHTWTVNKKQLPRVLPFAHSMVFTSDSSRLVIAGHDRLIYVVEIGSLEVIHRFTPCQQLKDEELPPKEPPITKMFTSSDGQWLAAINCLGDIYIFNLELLRQHWFISRLDGASVAAGGFPQWNNNVLVVTTSSNQIYAFDVEAKKLGDWSLRHPGALPKRFQEFPGEVIGLSFPHSTNTSAVIVYSSRAMCVVDIGLSVDRDNDCSQDLAMKNLKNISVNGTRKRMLSDLQTENKLSGGKNFEIRSFRDPVLFVGHLSKSSLLIIDKPWLDVVKSFDSQPVHRHIFGT 1275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27940639 27951105 - BLOR05010 Blo12g00991 68252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00991 1275 Pfam Serine carboxypeptidase 95 471 IPR001563 GO:0004185|GO:0006508
Blo12g00991 1275 Gene3D - 936 1183 IPR015943 GO:0005515
Blo12g00991 1275 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 174 IPR001563 GO:0004185|GO:0006508
Blo12g00991 1275 PRINTS Carboxypeptidase C serine protease (S10) family signature 175 185 IPR001563 GO:0004185|GO:0006508
Blo12g00991 1275 PRINTS Carboxypeptidase C serine protease (S10) family signature 210 235 IPR001563 GO:0004185|GO:0006508
Blo12g00991 1275 SUPERFAMILY alpha/beta-Hydrolases 95 470 IPR029058 -
Blo12g00991 1275 SMART WD40_4 652 691 IPR001680 GO:0005515
Blo12g00991 1275 SMART WD40_4 743 782 IPR001680 GO:0005515
Blo12g00991 1275 SMART WD40_4 464 503 IPR001680 GO:0005515
Blo12g00991 1275 SMART WD40_4 694 740 IPR001680 GO:0005515
Blo12g00991 1275 SMART WD40_4 510 556 IPR001680 GO:0005515
Blo12g00991 1275 SMART WD40_4 995 1030 IPR001680 GO:0005515
Blo12g00991 1275 Gene3D - 708 935 IPR015943 GO:0005515
Blo12g00991 1275 Gene3D alpha/beta hydrolase 86 478 IPR029058 -
Blo12g00991 1275 ProSiteProfiles Trp-Asp (WD) repeats profile. 750 791 IPR001680 GO:0005515
Blo12g00991 1275 SUPERFAMILY WD40 repeat-like 465 787 IPR036322 GO:0005515
Blo12g00991 1275 SUPERFAMILY WD40 repeat-like 725 1132 IPR036322 GO:0005515
Blo12g00991 1275 ProSiteProfiles Trp-Asp (WD) repeats profile. 659 700 IPR001680 GO:0005515
Blo12g00991 1275 Gene3D - 479 703 IPR015943 GO:0005515
Blo12g00991 1275 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 469 1275 IPR044622 GO:0010073|GO:0035266
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00991 K14548 UTP4, CIRH1A; U3 small nucleolar RNA-associated protein 4 - jre:109001109 1149.81
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Blo01g01492 Blo12g00991 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g00991 Blo-Chr12:27940639 Blo05g00468 Blo-Chr5:7170296 2.00E-75 dispersed
Blo03g00560 Blo-Chr3:22188250 Blo12g00991 Blo-Chr12:27940639 5.13E-36 transposed
Blo01g01492 Blo-Chr1:54420933 Blo12g00991 Blo-Chr12:27940639 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g629 Blo01g01492 Blo12g00991 Bda01g00594 Bda03g00168 Bpe02g00456 Bpe04g00153 Bma04g00142 Bma01g02244 . . Cma01g01778 Cma09g00298 Car01g01386 . . Cpe06g00208 . . . . . . . . . . . . . . . Cone4ag1622 Cone7ag1326 . . Lsi04g01475 Csa04g02488 . . . . . . . . . . Sed01g2728 Cmo01g01836 Cmo09g00290 . . . Car09g00251 . Cpe02g00228 Bhi09g03217 Tan01g4681 Cmetu07g0687 . Hepe01g1838 Mch11g0372 . Cla05g02114 Cam05g2266 Cec05g2287 Cco05g2329 Clacu05g2263 Cmu05g2126 Cre05g2249 . . Chy07g00197 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005030 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00991 Blo_Chr12 FPKM 15.418965 18.340805 8.992755 9.350783 23.908791 21.848669 25.278234 3.148016 3.195453 3.160356