Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00993 ATGTCATGGTTGGCGCGATCTCTGTCCAACTCCCTCCGATTGGAAGAAGATGAAGAAGATGACAGTGACCTCGTACCTGCCGTCTCTCTTTACCCGACACCATCCAATCCCACATCTGAAGATAAACGCGAATCTCAACTGCAGCAGCGAGCAGAAGGCGATGAAAACGGAACAGAATTCGAGGAAGAAGCTCATTCCCGCGGAGTCAAGGAGGATCTGACTGAGCTCAAACAAACCCTTAGTCGTCAATTTTGGGGAGTTGCATCTTTCCTCGCTCCTCCTGCAAACCCTTCTGCACCCTCTCATTCCCATTCAAATCTATCAGACTGCGATCGGGACCAATTTGAGTCGGATCAATCCTTCACCATGGGTCGCGAAGTGGAGCCGTCTGATCTGGCCGATGTGTCACAAATGGGTTTAAATTACGATAGGTTGGAGGAGGTGGAAGGAGAAGATGAGGAGTATCAAGATTATTGGGAGGAGGCGGTTGGAATAACCGACGAGGCGTTGACGTTTGCGAGCAATATCGCAATGCACCCAGAGACTTGGTTGGATTTTCCTATTGATGAAGAGGAAGACACCGACGTTCCTCTTGTTTTAGATTTTGAGTTGTCTGATGCCCAAAAAGGACATGCTTTCACCATTGAGCGCCTTGCTCCAAGGTTAGCTGCTCTCAGAATTGAGCTTTGTCCTTGCCATATGAGTGAGAGCTACTTTTGGAAAGTGTATTTTGTTCTCCTGCATTCAAGACTCAATAAACATGATGCTGAGATCTTGTCTACTCCCCAGGTAGTTGCAGCCAGAGCAATGTGGATGCTGGAGTTACAAAAGCAGACCAAGCAAGAATCTAACTGGTACGGACGGAGCACTTCTTATTCCAAGGATGGCCCTCGCCTTCAGTATGACGATGAGGGTCCCTTGTCTTCCAATTACACTCGTTCGGAAGACATGATATTAAGACCATCATCCACAACTGCAAATTATGAGATTGAGAAAAATCAGGTTGAAAGTGATGAGATTCATTTTGTCGACAAGTCTGTTATTGTTGAAAGGCCCGTCATCAAGACAGAGAATAAGAACATTGCACTCTGTTCTTCTTCTAAAGACACGGTTCGGGATTATGATGACGAGACAGACGAGTGGCCTGAGGAAGATTCAGAGTTTGGTGGATACAGTGGAACTATACTTCCTCTGGAGAATGAAGAAGATATATCTTTCAGTGATCTGGAGAATGATGATGTGATTGTACCCACAAAAACCAAAAAATGTCTCGAATAA 1278 45.7 MSWLARSLSNSLRLEEDEEDDSDLVPAVSLYPTPSNPTSEDKRESQLQQRAEGDENGTEFEEEAHSRGVKEDLTELKQTLSRQFWGVASFLAPPANPSAPSHSHSNLSDCDRDQFESDQSFTMGREVEPSDLADVSQMGLNYDRLEEVEGEDEEYQDYWEEAVGITDEALTFASNIAMHPETWLDFPIDEEEDTDVPLVLDFELSDAQKGHAFTIERLAPRLAALRIELCPCHMSESYFWKVYFVLLHSRLNKHDAEILSTPQVVAARAMWMLELQKQTKQESNWYGRSTSYSKDGPRLQYDDEGPLSSNYTRSEDMILRPSSTTANYEIEKNQVESDEIHFVDKSVIVERPVIKTENKNIALCSSSKDTVRDYDDETDEWPEEDSEFGGYSGTILPLENEEDISFSDLENDDVIVPTKTKKCLE 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27959408 27962592 + BLOR05012 Blo12g00993 68254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00993 425 MobiDBLite consensus disorder prediction 372 393 - -
Blo12g00993 425 PANTHER BSD DOMAIN-CONTAINING PROTEIN 1 422 - -
Blo12g00993 425 SUPERFAMILY BSD domain-like 164 256 IPR035925 -
Blo12g00993 425 Gene3D BSD domain 165 260 IPR035925 -
Blo12g00993 425 ProSiteProfiles BSD domain profile. 206 251 IPR005607 -
Blo12g00993 425 PANTHER BSD DOMAIN-CONTAINING PROTEIN 1 422 - -
Blo12g00993 425 Pfam BSD domain 201 255 IPR005607 -
Blo12g00993 425 SMART wurzfinal6 199 251 IPR005607 -
Blo12g00993 425 MobiDBLite consensus disorder prediction 1 71 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00993 - - - csv:101202841 397.127
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo08g00406 Blo-Chr8:7583806 Blo12g00993 Blo-Chr12:27959408 4.80E-33 dispersed
Blo10g00580 Blo-Chr10:17391463 Blo12g00993 Blo-Chr12:27959408 3.63E-08 dispersed
Blo11g00798 Blo-Chr11:12297708 Blo12g00993 Blo-Chr12:27959408 1.51E-07 dispersed
Blo12g00993 Blo-Chr12:27959408 Blo06g00935 Blo-Chr6:32558610 2.25E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g621 . Blo12g00993 . Bda03g00165 . Bpe04g00149 . . . . . Cma09g00302 Car01g01384 . . Cpe06g00212 . . . . . . . . . . . . . . . Cone4ag1626 . . . Lsi04g01466 Csa04g02495 . . . . . . . . . . Sed13g1819 Cmo01g01833 Cmo09g00301 . . . Car09g00254 . . Bhi09g03205 Tan01g4674 Cmetu07g0333 . Hepe01g1843 Mch11g0377 . . . . . . . . . . Chy07g00204 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007703 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00993 Blo_Chr12 FPKM 30.039059 30.71314 40.06834 39.278393 34.684483 39.371239 32.797478 47.520363 46.008083 44.900265