Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00995 ATGCAGCAGCTCCCTCTGAGACCAAGTCTTCCCAGTTATGCTGCTGCCGCACCTTCTTCACAGGCATTGACGATGCCATTTATTCAGGTTTCTCACCATCTCCAGTCGCAGCAAAATGCTCCTCAATTGGCCAATAATATGTCCAGTGTACCAACTCCTGGATTGCAGTTTTCTTCATCATATACTGTAAGTTCCATTTCTTTTATTTATCTGCCAATATCACAAATTCATGCCCCTATTGGAGCTGTTGCTGGCCAATCCTGGTTCTCCTCTGGAGGTCAGAGTGGTGCACCTGTTGCAACAGTGGAGCAGGCAACCCAGCAAACATTAGTCAACCCTTCCACAAATCCAACTGCTAATATTCCTCATTTGCAATCTTCATCTGATTGGCAAGAGCATGCATCTGCTGATGGAAGGAGATACTATTACAACAAAAGAACGAAGCAATCAAGTTGGGAGAAGCCTTTAGAACTAATGACACCGCTTGAGAGGGCAGATGCTTCAACTGTTTGGAAGGAATTTACTACTCCAGATGGAAGGAAGTATTATTACAACAAAGAGACAAAGGAATCTAAATGGGCTATGCCAGATGATTTAAAGATGGCTCGTGAACGGGCTCAACAAGAGGCTAGCCATGAGACACAATCAGATATGGCTGAGACTTCACATGCTGCTTCTGCAATTGAGGCTCCTATAGATCAAATATCTACTGCTGCTATGTCTGTCGAATCCAAAGCTTCTATAACTCTGTCTGAGATGCCTCAAAGTTCAGTTGTTGAAACACCTATTGTTATTGTATCTAATCCTCCTGCAGTTGAATTGGGAACTGTTTCATCAAATGCACTGACAACTGCAACAAATCAATCTCCAGTCACCAGCAACCAACCCGTTTCTGTTTCCAGTAGTACTGGTGCTCCTGCAACTTTGGTTATACCCAACACAGGATCAGTGATTCCTTCTGAAAGCCTAGCATCTAAAGATGTGAAGAATGATAAATCTCCTTTGGAGGATCTTGAGGAGACAAAAAAGGGAATTGCAGTGATTGGGAAAGTCAATCTCTCAGAGGAAAAAGCTGTTGAGGATGAACCAATGGTCTTTGCAAATAAGTTGGAGGCAAAAAATGCATTCAAAATCCTCTTGGAATCTTCTAATGTTAAATCCGATTGGACTTGGGAGCAGACTATGAAAGAGATAATCAATGACAAAAGATATGGTGCATTGAAAACGCCTGGTGAAAGGAAGCAAGCTTTCAATGAGGGTTTTTATGCATTTCTATCCCCTGAATGGATGTCAGATTATTTTGTATTGTGTCATTTTGAGTCTGAGGATCTCACATCATCTATGAGATGGAGTAAAGCTATTGGCCTATTTGAAAACGATGATCGGTTTAATGCTGTTGAACGAGCAAGAGATAGAGAAGACCTTTATGAGAGCTACATGGTGGAACTTGAGCGGAAGACCATCCATGTGATCTTTAGGTTGAAAATTTTATTTGGTATTCAATTTTTGAACACCTTCAAGTTACAATATGGATTAAATTTCATGGAAAAAGAGAAGGAAAAGGCAGCTGAAGAGCATAAGAAGAATATAGCTGAATACAGAAAATTTCTTGTGGCATGCGACTTTGTTAAGGTTAACAGCCAGTGGCGGAAAGTGCAAGATCGGTTAGAGGATGATGAAAAGAGCTCATGTCTTGAAAAGCTTGATCGGTTGCTTATTTTCCAGGACTATATCCGTGACCTGGAAAAGGAAGAGGATGACCACAAGAAGATACAGAAGGAGCAAATCAGAAGGGTTGAAAGAAAAAATCGTGATGAGTTTCGCAGGCTCATGGAGGATCATATTACTTCTGGTTTTCTTACCGCTAAAACTCTCTGGCGTGAGTACTGTTTGAAGGTCAAGAACTTACCTCAATATCTGTCGCTTGCTTGTAATATGTCTGGTTCCACGCCAAGAGATTTATTTGAAGATGTGACTGAAGAATTAGAAAAGCAGTATCATGAGGAAAAGGCTCAAATCAAAGATATTGTGAAATCAAGCAAGATTGCCATGACATCAGCATGGACATTTGAAATGTTCAAGGCTGCTATTAGAGAAAATGCTGGTTCTCTTACAGTATCAGATATTAATTTTGAGCTTGTATATGAAGAGTTTCTAGGAAGAGCCAAAGAGAAGGAGGAGAAAGAAGCTAAAAGGCGTCAGCGACTGGCCGATGACTTCACCAAGTTGCTGCATACGTTCAAGGAAATAACTGCATCTTCCAATTGGGAGGACAGCAAAGAACTTTTTGAAGAAAGCCAAGAGTACAGATCAATTGGGGAAGAAACCTTTGGGAGGGAGATTTTTGATGAATATGTTATGCTCCTACAAGAAAAGGCAAGAGAGAGAGAACGCAAGCGGGAGGAAGAGATGGCTAAGAAAGGAAAAGAAAGAGAGGAGAAAGAGAAAAGAAAGGAAAAAGAGCGGAAGGAGAAGGAGAGAGGAGATCGTGAAAAGGACAGGGTTCGATCGAAGGAGGGAACTGATGATGAAGCTACAGATATGATAGATGATCATAAAGAAGATAAGAAAAGGGACAGAGACAAGGAAAGGAAACACCGGAAGCGGCATCATAGTGCAAAAGATGATGGAGTTTCTGATAGGGATGAAAAAGAGGAACCTAAGAAATCACGCAAACATAGTAGTGACAGAAAAAAATCAAGGAAGGCATGTGAATTTATTTTATCGCATGTCGATAACTTCAAACAATTTTTTGATCACTGA 2763 40.83 MQQLPLRPSLPSYAAAAPSSQALTMPFIQVSHHLQSQQNAPQLANNMSSVPTPGLQFSSSYTVSSISFIYLPISQIHAPIGAVAGQSWFSSGGQSGAPVATVEQATQQTLVNPSTNPTANIPHLQSSSDWQEHASADGRRYYYNKRTKQSSWEKPLELMTPLERADASTVWKEFTTPDGRKYYYNKETKESKWAMPDDLKMARERAQQEASHETQSDMAETSHAASAIEAPIDQISTAAMSVESKASITLSEMPQSSVVETPIVIVSNPPAVELGTVSSNALTTATNQSPVTSNQPVSVSSSTGAPATLVIPNTGSVIPSESLASKDVKNDKSPLEDLEETKKGIAVIGKVNLSEEKAVEDEPMVFANKLEAKNAFKILLESSNVKSDWTWEQTMKEIINDKRYGALKTPGERKQAFNEGFYAFLSPEWMSDYFVLCHFESEDLTSSMRWSKAIGLFENDDRFNAVERARDREDLYESYMVELERKTIHVIFRLKILFGIQFLNTFKLQYGLNFMEKEKEKAAEEHKKNIAEYRKFLVACDFVKVNSQWRKVQDRLEDDEKSSCLEKLDRLLIFQDYIRDLEKEEDDHKKIQKEQIRRVERKNRDEFRRLMEDHITSGFLTAKTLWREYCLKVKNLPQYLSLACNMSGSTPRDLFEDVTEELEKQYHEEKAQIKDIVKSSKIAMTSAWTFEMFKAAIRENAGSLTVSDINFELVYEEFLGRAKEKEEKEAKRRQRLADDFTKLLHTFKEITASSNWEDSKELFEESQEYRSIGEETFGREIFDEYVMLLQEKARERERKREEEMAKKGKEREEKEKRKEKERKEKERGDREKDRVRSKEGTDDEATDMIDDHKEDKKRDRDKERKHRKRHHSAKDDGVSDRDEKEEPKKSRKHSSDRKKSRKACEFILSHVDNFKQFFDH 920
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27971385 27980953 - BLOR05014 Blo12g00995 68256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00995 920 MobiDBLite consensus disorder prediction 873 892 - -
Blo12g00995 920 CDD WW 171 198 IPR001202 GO:0005515
Blo12g00995 920 ProSiteProfiles FF domain profile. 369 423 IPR002713 -
Blo12g00995 920 SUPERFAMILY FF domain 734 795 IPR036517 -
Blo12g00995 920 SUPERFAMILY WW domain 170 204 IPR036020 GO:0005515
Blo12g00995 920 MobiDBLite consensus disorder prediction 794 861 - -
Blo12g00995 920 SUPERFAMILY WW domain 129 163 IPR036020 GO:0005515
Blo12g00995 920 Coils Coil 466 486 - -
Blo12g00995 920 CDD WW 128 157 IPR001202 GO:0005515
Blo12g00995 920 ProSiteProfiles WW/rsp5/WWP domain profile. 165 198 IPR001202 GO:0005515
Blo12g00995 920 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 513 904 - -
Blo12g00995 920 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 2 486 - -
Blo12g00995 920 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 513 904 IPR039726 GO:0045292
Blo12g00995 920 Gene3D FF domain 727 801 IPR036517 -
Blo12g00995 920 Gene3D - 167 212 - -
Blo12g00995 920 Gene3D - 124 166 - -
Blo12g00995 920 SUPERFAMILY FF domain 593 668 IPR036517 -
Blo12g00995 920 SMART ww_5 166 198 IPR001202 GO:0005515
Blo12g00995 920 SMART ww_5 125 157 IPR001202 GO:0005515
Blo12g00995 920 Coils Coil 652 679 - -
Blo12g00995 920 Coils Coil 512 532 - -
Blo12g00995 920 ProSiteProfiles FF domain profile. 526 580 IPR002713 -
Blo12g00995 920 MobiDBLite consensus disorder prediction 794 902 - -
Blo12g00995 920 ProSiteProfiles WW/rsp5/WWP domain profile. 124 157 IPR001202 GO:0005515
Blo12g00995 920 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 2 486 IPR039726 GO:0045292
Blo12g00995 920 SUPERFAMILY FF domain 360 419 IPR036517 -
Blo12g00995 920 Gene3D FF domain 369 420 IPR036517 -
Blo12g00995 920 Pfam WW domain 128 155 IPR001202 GO:0005515
Blo12g00995 920 Pfam WW domain 171 195 IPR001202 GO:0005515
Blo12g00995 920 ProSiteProfiles FF domain profile. 598 661 IPR002713 -
Blo12g00995 920 Coils Coil 574 594 - -
Blo12g00995 920 MobiDBLite consensus disorder prediction 203 224 - -
Blo12g00995 920 Pfam FF domain 440 479 IPR002713 -
Blo12g00995 920 Pfam FF domain 602 657 IPR002713 -
Blo12g00995 920 Pfam FF domain 371 419 IPR002713 -
Blo12g00995 920 ProSitePatterns WW/rsp5/WWP domain signature. 130 155 IPR001202 GO:0005515
Blo12g00995 920 Gene3D FF domain 513 590 IPR036517 -
Blo12g00995 920 Gene3D FF domain 591 672 IPR036517 -
Blo12g00995 920 SUPERFAMILY FF domain 441 486 IPR036517 -
Blo12g00995 920 SUPERFAMILY FF domain 518 587 IPR036517 -
Blo12g00995 920 Coils Coil 786 838 - -
Blo12g00995 920 Gene3D FF domain 438 485 IPR036517 -
Blo12g00995 920 SMART FF_2 427 482 IPR002713 -
Blo12g00995 920 SMART FF_2 526 580 IPR002713 -
Blo12g00995 920 SMART FF_2 733 788 IPR002713 -
Blo12g00995 920 SMART FF_2 600 661 IPR002713 -
Blo12g00995 920 SMART FF_2 369 423 IPR002713 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00995 K12821 PRPF40, PRP40; pre-mRNA-processing factor 40 - csv:101203479 895.575
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo02g00920 Blo-Chr2:35447375 Blo12g00995 Blo-Chr12:27971385 1.40E-179 dispersed
Blo06g00781 Blo-Chr6:31090964 Blo12g00995 Blo-Chr12:27971385 8.42E-13 dispersed
Blo12g00995 Blo-Chr12:27971385 Blo07g01207 Blo-Chr7:32028151 8.97E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g614 . Blo12g00995 . Bda03g00163 . Bpe04g00145 . . . . Cma01g01771 Cma09g00307 Car01g01380 . . Cpe06g00216 . . . . . . . . . . . . . . . . . Cone17ag0900 Cone20ag0242 Lsi04g01460 Csa04g02500 . . . . . . . Bpe05g00461 . . Sed13g1825 Cmo01g01829 Cmo09g00308 . . . Car09g00259 . Cpe02g00234 Bhi09g03198 Tan01g4668 Cmetu07g0441 . Hepe01g1848 Mch11g0381 . . . . . . . . . . Chy07g00208 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007062 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g00995 Blo_Chr12 FPKM 1.278132 1.274493 15.791845 11.759534 14.607973 11.813723 12.515871 0.967835 2.036339 2.18165