Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g00998 ATGGACGAGAACACTTCGGCGTCCGTCACCAATGCTTTTCCAGCTAGCTTCTACTCTTACCCTCATTTCAACAGCTCCACATTCGGCTACGAGATTGGTGGAAATGGCGGTTTCCACGCTCCATTGCCTCTCAAGCTAGACGGGTCTCTTTCGGTCATGGAAGCTCTTACCAGATCACAGCCCGAAGGAATGGTTCTGAATTCCTCGCCAAAGCTGGAGGATTTTTTCGGCGGTGCAAGCTTAGGAACACTTGCACACGACTACAGAAGCCATGGAAGAGAAGAAAGCTTTTATAATCAGAACTGCCAATCTGAAACAGAGAGGGAAGTTTCTTTCGATCTGCTTCAACAGCCATACGGGCAACAAGAGAGCCACATTCCAGTTCATTCTCATCCGTACATTTCAGGAATCCCCTGCCACGGGCTCTCCAATCCGTCATCGGAGGAGGAATCGAAGCTCAATATTTCCATCTGGGTGGCCTGTCAATACTCCGGAAATCAACCTCTGGAGCAGCATTTGAGCACCGGGATTATTGAAGTCGGAGCTTCTTCTGGGTCTGTCGGTCCGATGAGCTGCGGAAATTTGCAGTCGCTTAGTCTGTCTATGAGCCCGGGCTCACAGTCTAGCTGCGTTACTGCTCCTGCCCAGATCTCACCTGCTGATGTAGATTGTGCAGACATTGAAACGAAGAAAAGAGGTTCTACGAAGATGGGTCAGAAGCAGCCTGTTCATAGGAAGTCCATTGATACTTTTGGACAAAGAACGTCGCAGTACAGAGGCGTTACGAGACATAGGTGGACCGGAAGGTATGAAGCTCATTTATGGGACAACAGTTGCAAGAAGGAAGGACAAACCAGAAAGGGAAGACAAGGCGGCTACGATATGGAAGAGAAAGCTGCAAGAGCTTACGATCTTGCGGCTCTCAAGTACTGGGGACCATCAACGCACATAAACTTTCCGCTGGAGCATTATCATACTGAACTAGAAGAAATGAAGAACATGAGCCGCCAGGAATACGTAGCTCACCTGAGAAGGAAGAGTAGTGGATTTTCTAGGGGAGCTTCAATGTACAGAGGAGTAACGAGGTTCTTACACTTTGAGATGCACTCAAATTTTTACGTAGTTCATGTCAATCAGAGCTCGTTTTTGTCCAGGCATCACCAGCATGGAAGATGGCAAGCTCGGATTGGCCGTGTTGCTGGAAACAAAGATCTTTATCTTGGAACATTTAGCACCCAGGAGGAAGCTGCCGAAGCTTACGACATTGCGGCGATAAAGTTCCGAGGCGTAAATGCTGTTACCAACTTTGACATTTCACGATATGATGTCGAAAAAATCATGGCTAGTAGTACTCTACTTGCCGGCGAATTTGCTCGACGAAACAAAACAAGTGAACCAACCCGAATCATAGATCACAAACCACAAGTGGAAGAAAGTGGTGAAATCCATAACATGATAAACTCGGCGGATGAGCCAACGGTCGTTGAAACTGTCAGTTTGACTGATCCCGGGATTGGCCAATCAACAATGTTGGGGCCGCTATTTCCTATCCCTGCGCCAATGCCTACCAGTTTGAGCTGCTCAAGGGGCACCAACGCAGATAAAACCACCCCAATGCTGTTTGCAAAGCCTCCACTGGCATGGCTGCCCACAGCACAGCTGAGGTCTCCTGTTATTTCCATGTCTCAGTTGCCTGTTTTTGCAGCCTGGAATGACACCTAA 1722 48.2 MDENTSASVTNAFPASFYSYPHFNSSTFGYEIGGNGGFHAPLPLKLDGSLSVMEALTRSQPEGMVLNSSPKLEDFFGGASLGTLAHDYRSHGREESFYNQNCQSETEREVSFDLLQQPYGQQESHIPVHSHPYISGIPCHGLSNPSSEEESKLNISIWVACQYSGNQPLEQHLSTGIIEVGASSGSVGPMSCGNLQSLSLSMSPGSQSSCVTAPAQISPADVDCADIETKKRGSTKMGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLEHYHTELEEMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRFLHFEMHSNFYVVHVNQSSFLSRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVEKIMASSTLLAGEFARRNKTSEPTRIIDHKPQVEESGEIHNMINSADEPTVVETVSLTDPGIGQSTMLGPLFPIPAPMPTSLSCSRGTNADKTTPMLFAKPPLAWLPTAQLRSPVISMSQLPVFAAWNDT 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 27991434 27993787 + BLOR05017 Blo12g00998 68259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g00998 573 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 384 486 - -
Blo12g00998 573 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 363 - -
Blo12g00998 573 PRINTS Ethylene responsive element binding protein signature 302 322 IPR001471 GO:0003700|GO:0006355
Blo12g00998 573 PRINTS Ethylene responsive element binding protein signature 258 269 IPR001471 GO:0003700|GO:0006355
Blo12g00998 573 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 8 363 - -
Blo12g00998 573 CDD AP2 385 439 IPR001471 GO:0003700|GO:0006355
Blo12g00998 573 ProSiteProfiles AP2/ERF domain profile. 356 437 IPR001471 GO:0003700|GO:0006355
Blo12g00998 573 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 384 486 - -
Blo12g00998 573 Pfam AP2 domain 257 312 IPR001471 GO:0003700|GO:0006355
Blo12g00998 573 Pfam AP2 domain 385 429 IPR001471 GO:0003700|GO:0006355
Blo12g00998 573 SUPERFAMILY DNA-binding domain 256 322 IPR016177 GO:0003677
Blo12g00998 573 ProSiteProfiles AP2/ERF domain profile. 257 320 IPR001471 GO:0003700|GO:0006355
Blo12g00998 573 SMART rav1_2 385 443 IPR001471 GO:0003700|GO:0006355
Blo12g00998 573 SMART rav1_2 257 326 IPR001471 GO:0003700|GO:0006355
Blo12g00998 573 CDD AP2 256 320 IPR001471 GO:0003700|GO:0006355
Blo12g00998 573 Gene3D AP2/ERF domain 256 322 IPR036955 GO:0003700|GO:0006355
Blo12g00998 573 Gene3D AP2/ERF domain 383 439 IPR036955 GO:0003700|GO:0006355
Blo12g00998 573 SUPERFAMILY DNA-binding domain 385 439 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo06g00028 Blo-Chr6:526846 Blo12g00998 Blo-Chr12:27991434 7.59E-156 dispersed
Blo07g00789 Blo-Chr7:25422150 Blo12g00998 Blo-Chr12:27991434 1.10E-115 dispersed
Blo10g00974 Blo-Chr10:28913341 Blo12g00998 Blo-Chr12:27991434 1.47E-120 dispersed
Blo11g00401 Blo-Chr11:3476505 Blo12g00998 Blo-Chr12:27991434 3.95E-106 dispersed
Blo12g00998 Blo-Chr12:27991434 Blo16g00310 Blo-Chr16:7708927 2.90E-88 dispersed
Blo01g01486 Blo-Chr1:54305900 Blo12g00998 Blo-Chr12:27991434 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
13083 PF00847 AP2 3.80E-10 CL0081 Blo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g00998 K09285 - jre:108983297 676.011