Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01000 ATGGCTCTCCCTGCCGCAGTCAAACAGTTGGGCCTTATACCTGGCCTGGTGATGATCGTGTTGGTATCGATGTTGACGGAGTTCTCCATCGATATGATTCTTAAATTCTCTCGTGCTTCCAAATCCTCAACGTATTCTGGTGTCGTCCAAGACGCTTTTGGTGGAGTCGGGCGAACGCTCTTGCAGGTCTGCATTGTGGTCAATAACTTGGGAATGCTTGTGGTCTACATGATCATAATCGGTGATGTGCTATCTGGAACGCGGTTGGAGGGGGTCCACCACTCTGGTGTAATAGAAGAATGGTTTGGTCAGCATTGGTGGACAACACGCTCTTCCTTACTTCTTGTCACCACTGTTCTAATATTTGCTCCTCTCATATCATTTAAACGCGTAGATTCACTGAGATACACATCGGCACTGTCAGTTGGTTTGGCCATTGTATTTGTGGCAATTACAGCTGGAGTCTCAATCACTAAATTGTTGAATGGGAGCTTAGGAATGCCGCGACTTATGCCTGAACTTGTGGATCAAGCATCATTTTGGAAACTTTTCACCACAATTCCTGTTCTAGTCACGGCATATATTTGTCACCACAATGTTCACCCCATTGAAAATGAACTAAATGATCCCACAAAAATGAAATCCATAGTTCACACGTCAATCACATTATGTGCGGCTGTTTACATTGCAACTAGCTTCTTTGGAGCGCTCCTCTTTGGGGATCAAACGCTGGATGATATACTTGCCAATTTTGATGGTGATCTTGGCGTGGCACATAGCATATTACTGAATGATGTTGTTAGGGTCAGCTATGGCATCCACTTGATGCTTGTCTTTCCAATTGTATTTTATTCTCTTCGGCTCAACCTTGATGGTCTTCTTTTTCCCTATGCTATTCCCCTTGCTTTTGACAACCAAAGATTTTATTCAGTTACAGCAGCTCTTATGGCCTTTATCTTTGTGGCGGCCAATTTCGTAGGCAGCATCTGGGATGCTTTTCAGTTCACTGGTGCCACAGCTGCTATATCTGTCGCTTTCATCTTCCCAGCTGCTATAGTACTTAGGGATAGCCATGGAATTGCAACAAAGAAAGATTCAATCGTATCATGGGCTATGCTTATATTAGCTGTTTCATCTAGCATCGCCGCCATCTCTTCTGACCTTTACAACACATTCAGTGGGGAGGAAAGATATGAAAGATGA 1203 43.89 MALPAAVKQLGLIPGLVMIVLVSMLTEFSIDMILKFSRASKSSTYSGVVQDAFGGVGRTLLQVCIVVNNLGMLVVYMIIIGDVLSGTRLEGVHHSGVIEEWFGQHWWTTRSSLLLVTTVLIFAPLISFKRVDSLRYTSALSVGLAIVFVAITAGVSITKLLNGSLGMPRLMPELVDQASFWKLFTTIPVLVTAYICHHNVHPIENELNDPTKMKSIVHTSITLCAAVYIATSFFGALLFGDQTLDDILANFDGDLGVAHSILLNDVVRVSYGIHLMLVFPIVFYSLRLNLDGLLFPYAIPLAFDNQRFYSVTAALMAFIFVAANFVGSIWDAFQFTGATAAISVAFIFPAAIVLRDSHGIATKKDSIVSWAMLILAVSSSIAAISSDLYNTFSGEERYER 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28002240 28005548 - BLOR05019 Blo12g01000 68261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01000 400 Pfam Transmembrane amino acid transporter protein 2 370 IPR013057 -
Blo12g01000 400 PANTHER AMINO ACID TRANSPORTER AVT6A 1 393 - -
Blo12g01000 400 PANTHER AMINO ACID TRANSPORTER 1 393 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01000 K14207 SLC38A2, SNAT2; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2 - qsu:111985240 630.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo11g00330 Blo-Chr11:2754481 Blo12g01000 Blo-Chr12:28002240 1.81E-176 dispersed
Blo12g01000 Blo-Chr12:28002240 Blo13g00814 Blo-Chr13:30881574 2.81E-108 dispersed
Blo12g01000 Blo-Chr12:28002240 Blo17g00398 Blo-Chr17:4535039 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g604 . Blo12g01000 . Bda03g00158 . Bpe04g00140 . . . . . Cma09g00312 . . . Cpe06g00221 . . . . . . . . . . . . . . . . . Cone17ag0904 Cone20ag0247 Lsi04g01453 Csa04g02507 . . . . . . . . . . Sed06g0897 . Cmo09g00312 . . . Car09g00264 . . Bhi09g03189 Tan01g4658 Cmetu05g1084 . Hepe01g1853 Mch11g0388 . . . . . . . . . . Chy07g00214 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Blo11g00392 . 46 466 Amino Acid/Auxin Permease AAAP Family AT5G16740 62.1 2.7e-139 492.3
Blo13g00927 . 253 498 Amino Acid/Auxin Permease AAAP Family AT5G02170 53.4 4.5e-63 239.2
Blo07g01224 CCT,ECH 45 414 Amino Acid/Auxin Permease AAAP Family AT2G41190 64.7 1.3e-129 460.3
Blo11g00330 CCT 29 465 Amino Acid/Auxin Permease AAAP Family AT3G30390 76.7 4.4e-188 654.4
Blo17g00398 CCT 25 458 Amino Acid/Auxin Permease AAAP Family AT3G30390 73.7 3.6e-182 634.8
Blo12g01000 . 1 392 Amino Acid/Auxin Permease AAAP Family AT3G30390 58.4 2.2e-131 466.1
Blo18g00389 . 29 432 Amino Acid/Auxin Permease AAAP Family AT3G28960 58.4 7.2e-134 474.2
Blo01g00429 . 17 394 Amino Acid/Auxin Permease AAAP Family AT3G28960 52.6 3.8e-103 372.1
Blo11g00330 CCT 24 465 Amino Acid/Auxin Permease AAAP Family AT5G38820 71.6 6.7e-181 630.6
Blo17g00398 CCT 20 456 Amino Acid/Auxin Permease AAAP Family AT5G38820 70.8 9.1e-178 620.2
Blo12g01000 . 1 393 Amino Acid/Auxin Permease AAAP Family AT5G38820 57.7 2.2e-131 466.1
Blo07g00684 . 1 496 Amino Acid/Auxin Permease AAAP Family AT1G80510 64.8 1.2e-167 586.6
Blo12g00424 CCT,ECH 156 612 Amino Acid/Auxin Permease AAAP Family AT5G02180 54.4 3.8e-130 462.2
Blo13g00927 . 224 530 Amino Acid/Auxin Permease AAAP Family AT5G02180 53.4 6.2e-80 295.4
Blo12g00424 CCT,ECH 129 612 Amino Acid/Auxin Permease AAAP Family AT3G09330 54.9 5.3e-129 458.4
Blo13g00927 . 223 529 Amino Acid/Auxin Permease AAAP Family AT3G09330 51.6 1.0e-76 284.6
Blo12g00424 CCT,ECH 170 612 Amino Acid/Auxin Permease AAAP Family AT3G09340 56.5 3.8e-127 452.2
Blo13g00927 . 223 529 Amino Acid/Auxin Permease AAAP Family AT3G09340 51.6 6.1e-77 285.4
Blo13g00927 . 223 463 Amino Acid/Auxin Permease AAAP Family AT2G39130 73.3 6.8e-94 341.7
Blo13g00928 . 1 239 Amino Acid/Auxin Permease AAAP Family AT2G39130 65.3 8.6e-73 271.6
Blo18g00389 . 97 432 Amino Acid/Auxin Permease AAAP Family AT5G15240 59.6 5.4e-103 371.3
Blo01g00429 . 75 395 Amino Acid/Auxin Permease AAAP Family AT5G15240 51.4 3.7e-83 305.4
Blo04g00201 CCT 1 479 Amino Acid/Auxin Permease AAAP Family AT3G56200 55.1 9.7e-129 457.2
Blo13g00814 CCT 1 396 Amino Acid/Auxin Permease AAAP Family AT3G56200 59.3 4.7e-123 438.3
Blo13g00927 . 223 477 Amino Acid/Auxin Permease AAAP Family AT3G54830 68.0 3.0e-95 346.3
Blo13g00928 . 1 239 Amino Acid/Auxin Permease AAAP Family AT3G54830 56.3 3.2e-60 229.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011762 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g01000 Blo_Chr12 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0