Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Blo12g01002 ATGGGCGCTGATAGAGATCGGAAAGGTGAAAACCCTGGGCCATCTTCGAATTCGTATCAAGAAGTGGACGATTTCAAGATATGGGGCATTTTCATCTTCGGCCTCATCGGCGCCACAGCAACAACTTTCGCGCTGACCTTACTAACATGTGTTCTGCTGAAGTTGACCAGATCGTCAAGGAAAGGAGCACCAAGTAGTTCTTACCGATCAAGCTTCCAAGATGGAGCACGGAATAGGTGTACTCGCCAAAGGAAAGAAGAGTACGAAGAAGAAATGGAGAGAGTGGAGAGAATAAGGCGTGTTCAAAGGGTTTTCAACAGAGAGAGGAACAAATACAAGAATAGCTATGAAAGCTGGACAGATAATGGTTCTAGTGCATATAATCAGCATTTCCAGCGAGATGACTGGTATTGGAAGATTGACCCATCCTATAAAGATCACAGAAATAATAACATGGAAACTCCAAGTAACAGCGTCAGCTATTCACTGTCACACCACTACTTAGTATTGGGTCTTGACAGGTCAAGAACACGACCATATTCAGACTCTGAGATTAAGATAGCATTTCAGGCCAAGGCCAAACAATGTCATCCAGATCAAAACCAAGATAATCAAGAGGTTGCCGAGGCAAAGTTCAAAGAGGTAATGGAGTCGTACAGAGCAATTAGGCAGGAAAGAAAGGACAAGCCTCTTTAA 696 43.68 MGADRDRKGENPGPSSNSYQEVDDFKIWGIFIFGLIGATATTFALTLLTCVLLKLTRSSRKGAPSSSYRSSFQDGARNRCTRQRKEEYEEEMERVERIRRVQRVFNRERNKYKNSYESWTDNGSSAYNQHFQRDDWYWKIDPSYKDHRNNNMETPSNSVSYSLSHHYLVLGLDRSRTRPYSDSEIKIAFQAKAKQCHPDQNQDNQEVAEAKFKEVMESYRAIRQERKDKPL 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28014186 28017224 - BLOR05021 Blo12g01002 68263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Blo12g01002 231 SUPERFAMILY Chaperone J-domain 159 227 IPR036869 -
Blo12g01002 231 SMART dnaj_3 164 227 IPR001623 -
Blo12g01002 231 MobiDBLite consensus disorder prediction 60 77 - -
Blo12g01002 231 CDD DnaJ 166 220 IPR001623 -
Blo12g01002 231 ProSiteProfiles dnaJ domain profile. 165 231 IPR001623 -
Blo12g01002 231 Pfam DnaJ domain 166 227 IPR001623 -
Blo12g01002 231 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 5 229 - -
Blo12g01002 231 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 5 229 - -
Blo12g01002 231 MobiDBLite consensus disorder prediction 60 89 - -
Blo12g01002 231 Coils Coil 78 98 - -
Blo12g01002 231 PRINTS DnaJ domain signature 207 227 IPR001623 -
Blo12g01002 231 PRINTS DnaJ domain signature 189 204 IPR001623 -
Blo12g01002 231 Gene3D DnaJ domain 153 230 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Blo12g01002 - - - jre:109013468 255.758
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Blo12g01002 Blo-Chr12:28014186 Blo02g00124 Blo-Chr2:1034909 4.44E-06 dispersed
Blo12g01002 Blo-Chr12:28014186 Blo17g00899 Blo-Chr17:29620525 1.58E-61 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g601 . Blo12g01002 . Bda03g00156 . Bpe04g00138 . . Cmo05g00122 Cmo12g00554 . . . Car12g00558 . . Cpe07g00535 Bhi04g00466 . . . . . Lcy13g2158 Cla08g01645 . . . . . Cre08g1620 . Cone7ag1314 Cone17ag0906 Cone20ag0249 . . . Cme03g02129 . . . . . . . . . . . Cma12g00617 Cma05g00120 Car05g00102 . Cpe11g00104 . . . . . . . . . . . . . . . Lsi08g01553 Csa02g01866 Chy03g01619 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007061 3 2 2 0 2 0 2 0 0 1 1 0 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Blo12g01002 Blo_Chr12 FPKM 20.878061 23.48852 60.25605 54.775509 18.31072 18.577801 18.317829 25.190744 27.210268 27.097202